PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g044210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 454aa MW: 49267.4 Da PI: 6.8217 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 113.6 | 1.3e-35 | 96 | 186 | 3 | 98 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 f r+wse+Dei+lLqG+i fka++g+sp+dd+++f+ k+sisf+++k+q+veKir+LK+K+ +k k+ + sf k+hd k+f+l++ iWg Csa01g044210.1 96 FARIWSEDDEISLLQGMIRFKAEKGTSPYDDMNGFFLVTKDSISFDATKTQFVEKIRSLKNKYYNKGKD-----SRSFLKPHDVKCFKLASCIWG 185 89**************************************************************99888.....89******************9 PP DUF573 98 s 98 s Csa01g044210.1 186 S 186 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.9E-28 | 96 | 185 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MAKKVLNPLE DPPTASSSSD EEEVESSSSG EEGEEQQQQQ LSISDEPKNP SPKPLKTPST 60 AAAAAPSSGS EKKRASEEAN EEHAKRAKTL SQKSPFARIW SEDDEISLLQ GMIRFKAEKG 120 TSPYDDMNGF FLVTKDSISF DATKTQFVEK IRSLKNKYYN KGKDSRSFLK PHDVKCFKLA 180 SCIWGSDDAV ALLDSAPPVI VKSPPVAVKS PPVDVISNKV DKKKKKKLEF GDEEMQVLGS 240 DDGMALLDSA PPVAVTLAVK PPPVAVISNK VVDKKKKKKL EVEDKEKKVL GSDDGMALLD 300 SAPAVKSPPV AVISNQVDKK NKNKKKKKLE VEDEKVQVLG SDGMVLESAA VVKANGSLKP 360 EGDTVEKDKE VVILLGGVSE SSDLFDKSFL VPLIVSLGGV DECSVKHKWS KVPMETKKRI 420 EDKLKLVEAK EFELLLQKSD IVKEVASVIT QAI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 272 | 279 | DKKKKKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g044210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010416136.1 | 0.0 | PREDICTED: probable transcription factor At1g44810 | ||||
Swissprot | Q9LPF0 | 5e-39 | STKLB_ARATH; Probable transcription factor At1g44810 | ||||
TrEMBL | R0G5T3 | 2e-57 | R0G5T3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010416136.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44810.1 | 5e-30 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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