PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g044210.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 454aa MW: 49267.4 Da PI: 6.8217

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g044210.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	113.6	1.3e-35	96	186	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 f r+wse+Dei+lLqG+i fka++g+sp+dd+++f+ k+sisf+++k+q+veKir+LK+K+ +k k+ + sf k+hd k+f+l++ iWg Csa01g044210.1 96 FARIWSEDDEISLLQGMIRFKAEKGTSPYDDMNGFFLVTKDSISFDATKTQFVEKIRSLKNKYYNKGKD-----SRSFLKPHDVKCFKLASCIWG 185 89************************************************************99888.....89****************9 PP DUF573 98 s 98 s Csa01g044210.1 186 S 186 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.9E-28	96	185	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MAKKVLNPLE DPPTASSSSD EEEVESSSSG EEGEEQQQQQ LSISDEPKNP SPKPLKTPST 60 AAAAAPSSGS EKKRASEEAN EEHAKRAKTL SQKSPFARIW SEDDEISLLQ GMIRFKAEKG 120 TSPYDDMNGF FLVTKDSISF DATKTQFVEK IRSLKNKYYN KGKDSRSFLK PHDVKCFKLA 180 SCIWGSDDAV ALLDSAPPVI VKSPPVAVKS PPVDVISNKV DKKKKKKLEF GDEEMQVLGS 240 DDGMALLDSA PPVAVTLAVK PPPVAVISNK VVDKKKKKKL EVEDKEKKVL GSDDGMALLD 300 SAPAVKSPPV AVISNQVDKK NKNKKKKKLE VEDEKVQVLG SDGMVLESAA VVKANGSLKP 360 EGDTVEKDKE VVILLGGVSE SSDLFDKSFL VPLIVSLGGV DECSVKHKWS KVPMETKKRI 420 EDKLKLVEAK EFELLLQKSD IVKEVASVIT QAI*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MAKKVLNPLE DPPTASSSSD EEEVESSSSG EEGEEQQQQQ LSISDEPKNP SPKPLKTPST  60
AAAAAPSSGS EKKRASEEAN EEHAKRAKTL SQKSPFARIW SEDDEISLLQ GMIRFKAEKG  120
TSPYDDMNGF FLVTKDSISF DATKTQFVEK IRSLKNKYYN KGKDSRSFLK PHDVKCFKLA  180
SCIWGSDDAV ALLDSAPPVI VKSPPVAVKS PPVDVISNKV DKKKKKKLEF GDEEMQVLGS  240
DDGMALLDSA PPVAVTLAVK PPPVAVISNK VVDKKKKKKL EVEDKEKKVL GSDDGMALLD  300
SAPAVKSPPV AVISNQVDKK NKNKKKKKLE VEDEKVQVLG SDGMVLESAA VVKANGSLKP  360
EGDTVEKDKE VVILLGGVSE SSDLFDKSFL VPLIVSLGGV DECSVKHKWS KVPMETKKRI  420
EDKLKLVEAK EFELLLQKSD IVKEVASVIT QAI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	279	DKKKKKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g044210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010416136.1	0.0	PREDICTED: probable transcription factor At1g44810
Swissprot	Q9LPF0	5e-39	STKLB_ARATH; Probable transcription factor At1g44810
TrEMBL	R0G5T3	2e-57	R0G5T3_9BRAS; Uncharacterized protein
STRING	XP_010416136.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G44810.1	5e-30	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]