PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g043720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 416aa    MW: 45440.1 Da    PI: 6.6192
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g043720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.3e-28152206156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH+rFveaveqL G +kA+P++ilelm+v++Lt+++v+SHLQkYR++
  Csa01g043720.1 152 KMKVDWTPELHRRFVEAVEQL-GVDKAVPSRILELMGVHCLTRHNVASHLQKYRSH 206
                     5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.762149208IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-27150209IPR009057Homeodomain-like
SuperFamilySSF466891.08E-18151209IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-26152206IPR006447Myb domain, plants
PfamPF002494.0E-8155204IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLALSPATRD GWDVASEFLD TSSCGFTINL EEDEFPDFAD HGDLLDIIDF DDLFGAAGDV  60
LPDLEIDPEI LAGDFSDHMN ASSTITTASD KTDSQGDTNK GVTGKGEEVI SKRDDAAAET  120
VTYEGDCDRK RKYPSSASFK NNRISKNDGK RKMKVDWTPE LHRRFVEAVE QLGVDKAVPS  180
RILELMGVHC LTRHNVASHL QKYRSHRKHL LAREAEAANW TRKRHIYGVD TGGNINGRSK  240
NGWLAPAPTL GFPPPPVAVA PAPPVHHHHF RPLHVWGHPT VDQSVMSHVW PKHLPPPSAA  300
MPNPPFWVSD SPYWHPIIHN GTTPYLPTAA TRFRASPVAG IPQALPPVYK PNHGFGGGRP  360
PVDLHPSKES VDAAIGDVLT RPWLPLPLGL KPPVVDGVMT ELHRHGVSEV PPTAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-15157208657Transcription factor LUX
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128153RKRKYPSSASFKNNRISKNDGKRKMK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g043720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0624890.0AB062489.1 Arabidopsis thaliana mRNA for GPRI1, complete cds.
GenBankAY0267720.0AY026772.1 Arabidopsis thaliana golden2-like transcription factor (GLK1) mRNA, complete cds.
GenBankAY0546000.0AY054600.1 Arabidopsis thaliana Unknown protein (At2g20570; F23N11.11) mRNA, complete cds.
GenBankAY0814850.0AY081485.1 Arabidopsis thaliana unknown protein (At2g20570) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415523.10.0PREDICTED: transcription activator GLK1-like
SwissprotQ9SIV30.0GLK1_ARATH; Transcription activator GLK1
TrEMBLD7L4H90.0D7L4H9_ARALL; Uncharacterized protein
STRINGXP_010415523.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22092773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.10.0GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Tokumaru M, et al.
    Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals.
    Plant Physiol., 2017. 173(1): p. 524-535
    [PMID:27821720]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Wang H,Seo JK,Gao S,Cui X,Jin H
    Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1.
    New Phytol., 2017. 215(3): p. 1144-1155
    [PMID:28656601]