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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g041280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 215aa MW: 23825.9 Da PI: 8.4555 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38 | 3.6e-12 | 76 | 132 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++ +r+ +NRe+ArrsR RK++ ++ L+ + +L++ N++ + l ++++ k ++ Csa01g041280.1 76 RKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQA 132 57899*********************************8877777666666666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.7E-16 | 72 | 136 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.2E-10 | 73 | 120 | No hit | No description |
PROSITE profile | PS50217 | 10.197 | 74 | 137 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.34E-11 | 76 | 129 | No hit | No description |
Pfam | PF00170 | 2.0E-9 | 76 | 126 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.70E-21 | 77 | 128 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 79 | 94 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTPVLCEILL SGLTVKSALR RRTHLVQSFS VVFLYCFLVL KKISMASSSS TYRSSSSSDG 60 GNNNPSSDSV VTVDERKRKR MLSNRESARR SRMRKQKHVD DLTAQINQLS NDNRQILNSL 120 TVTSQLYMKI QAENSVLTAQ MSELSTRLQS LNEIVDLVQS NGAGFGVDQI DGCGFDDRTV 180 GIDGYYDDMM SGVNHWGGSV YSNQPIMAND INMY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 96 | RKRKRMLSNRESARRSRMRKQK |
2 | 88 | 95 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250|UniProtKB:O65683, ECO:0000269|PubMed:29348240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g041280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007212 | 0.0 | AC007212.7 Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence. | |||
GenBank | AK230244 | 0.0 | AK230244.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-13-A15. | |||
GenBank | AY037216 | 0.0 | AY037216.1 Arabidopsis thaliana At2g18160/F8D23.6 mRNA, complete cds. | |||
GenBank | BT000700 | 0.0 | BT000700.1 Arabidopsis thaliana clone RAFL08-13-K01 (R11176) putative bZIP transcription factor (At2g18160) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010413979.1 | 1e-121 | PREDICTED: bZIP transcription factor 2 | ||||
Refseq | XP_010467622.1 | 1e-121 | PREDICTED: bZIP transcription factor 2 | ||||
Swissprot | Q9SI15 | 1e-107 | BZIP2_ARATH; bZIP transcription factor 2 | ||||
TrEMBL | A0A3P6ES75 | 1e-119 | A0A3P6ES75_BRAOL; Uncharacterized protein | ||||
STRING | XP_010413979.1 | 1e-121 | (Camelina sativa) | ||||
STRING | XP_010467622.1 | 1e-121 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18160.1 | 1e-102 | basic leucine-zipper 2 |
Publications ? help Back to Top | |||
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