PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g039980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 66aa MW: 7735.77 Da PI: 8.4878 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 8e-06 | 37 | 56 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ff r G+C +G+ C++ H Csa01g039980.1 37 ICSFFIR-GECTRGAECPYRH 56 6**9999.**********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16131 | 1.5E-8 | 30 | 63 | IPR032297 | Torus domain |
PROSITE profile | PS50103 | 14.22 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-6 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-7 | 34 | 57 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
MIERLDYESS FGKIRSNDTI RMLQRTTPYY KRNRAHICSF FIRGECTRGA ECPYRHEMPE 60 TGDLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_P | 6e-17 | 11 | 63 | 137 | 190 | Pre-mRNA-splicing factor RBM22 |
5xjc_O | 6e-17 | 11 | 63 | 137 | 190 | Pre-mRNA-splicing factor RBM22 |
5yzg_O | 6e-17 | 11 | 63 | 137 | 190 | Pre-mRNA-splicing factor RBM22 |
5z56_O | 6e-17 | 11 | 63 | 137 | 190 | Pre-mRNA-splicing factor RBM22 |
5z57_O | 6e-17 | 11 | 63 | 137 | 190 | Pre-mRNA-splicing factor RBM22 |
6ff4_P | 6e-17 | 11 | 63 | 137 | 190 | Pre-mRNA-splicing factor RBM22 |
6ff7_P | 6e-17 | 11 | 63 | 137 | 190 | Pre-mRNA-splicing factor RBM22 |
6icz_O | 6e-17 | 11 | 63 | 137 | 190 | Pre-mRNA-splicing factor RBM22 |
6id0_O | 6e-17 | 11 | 63 | 137 | 190 | Pre-mRNA-splicing factor RBM22 |
6id1_O | 6e-17 | 11 | 63 | 137 | 190 | Pre-mRNA-splicing factor RBM22 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g039980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004561 | 2e-68 | AC004561.3 Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete sequence. | |||
GenBank | AF428354 | 2e-68 | AF428354.1 Arabidopsis thaliana At2g29580/F16P2.4 mRNA, complete cds. | |||
GenBank | BT002621 | 2e-68 | BT002621.1 Arabidopsis thaliana At2g29580/F16P2.4 gene, complete cds. | |||
GenBank | CP002685 | 2e-68 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410015.1 | 2e-35 | zinc finger CCCH domain-containing protein 25 | ||||
Swissprot | Q9ZW36 | 1e-35 | C3H25_ARATH; Zinc finger CCCH domain-containing protein 25 | ||||
TrEMBL | A0A1J3E569 | 5e-34 | A0A1J3E569_NOCCA; Zinc finger CCCH domain-containing protein 25 (Fragment) | ||||
TrEMBL | V4MG00 | 6e-34 | V4MG00_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.27991s0221.1.p | 7e-35 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3479 | 3 | 3 |