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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa01g035930.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
NAC |
| Protein Properties |
Length: 316aa MW: 36051.9 Da PI: 4.6389 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa01g035930.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 100.1 | 3.2e-31 | 44 | 175 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90
lppGf+F P+deel +yLk ++k +++ i++v+iyk++P +L ++++ +++ew+f ++r+k ++gkr++r gyW+at k
Csa01g035930.1 44 LPPGFKFTPSDEELCIDYLKSFSPDRKyyyPPFNIPIHHVNIYKSNPYQLSVEFEKgNDEEWFFVTERNKIGKSGKRQKRgDDCGGYWNATVGAK 138
79********************99999886555445**************965555267799999999999999******87789********** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++ + ++ +vg + L + gr p+g+ktdW+mhey +
Csa01g035930.1 139 QIDA-GQGDVGYVTALEYCVGRPPNGVKTDWLMHEYWF 175
**99.9999***************************75 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MSMPSRNKRK ERSTPEPQTQ PPSEIASSSS SSSSSAAHNL PYLLPPGFKF TPSDEELCID 60
YLKSFSPDRK YYYPPFNIPI HHVNIYKSNP YQLSVEFEKG NDEEWFFVTE RNKIGKSGKR 120
QKRGDDCGGY WNATVGAKQI DAGQGDVGYV TALEYCVGRP PNGVKTDWLM HEYWFESSSD 180
DNDKVDYALC KIYLTPSAVK RMKAEKKEKL KKGKGVSKEE VKQLDLQHQQ DQSQLQQPHD 240
SLLTAQQHEP QPQPLVIPHD DNFDDFDDFD ELPQDFKDFL AEFMKPDSLD GDEELDDSDF 300
LQGFVTDGMM KDYTN*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-20 | 44 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-20 | 44 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-20 | 44 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-20 | 44 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 2e-20 | 44 | 201 | 17 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-20 | 44 | 201 | 17 | 171 | NAC domain-containing protein 19 |
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