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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa01g032700.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
C2H2 |
| Protein Properties |
Length: 279aa MW: 30110.9 Da PI: 8.7832 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa01g032700.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.7 | 0.00078 | 69 | 88 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS
zf-C2H2 2 kCpdCgksFsrksnLkrHir 21
+C+ Cgk F + L H+r
Csa01g032700.1 69 PCTECGKQFGSLKALFGHMR 88
5******************8 PP
|
| 2 | zf-C2H2 | 11.4 | 0.00099 | 157 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ C+k+F ++ L H tH
Csa01g032700.1 157 FECGGCKKVFGSHQALGGHRATH 179
89**************9999998 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Pfam | PF13912 | 3.9E-10 | 68 | 92 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 10.076 | 68 | 95 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.017 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 5.86E-8 | 69 | 90 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 4.5E-4 | 70 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.86E-8 | 152 | 179 | No hit | No description |
| Pfam | PF13912 | 5.6E-8 | 156 | 181 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.764 | 157 | 184 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 2.4 | 157 | 179 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 159 | 179 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.01E-5 | 217 | 244 | No hit | No description |
| Pfam | PF13912 | 8.1E-13 | 218 | 242 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.203 | 218 | 245 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.12 | 218 | 240 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 220 | 240 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MSNSSNSDPN FDIPFASSDV PLPSYNQKPR RKRTKLTNNE PGSSFSPSPR PNPVKKPLDS 60
DAPPQIARPC TECGKQFGSL KALFGHMRCH PERQWRGIIP PPDHKRGTNA TAASSSSNLN 120
FVLNKSEEED HNIASCLLLL AKRPVVLSSS SGVEGRFECG GCKKVFGSHQ ALGGHRATHK 180
DVKGCFAASN STEDPSPPQE IVGQDKGKSV KLVSGMNHRC QICLRVFSSG QALGGHMRCH 240
WEKDQEEHQV RAIDLNVPAA TSPPDTSIGC SLDLRLGL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC007127 | 1e-117 | AC007127.7 Arabidopsis thaliana chromosome 2 clone T23A1 map mi398, complete sequence. |
| GenBank | CP002685 | 1e-117 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| GenBank | DQ056533 | 1e-117 | DQ056533.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At2g17180) mRNA, complete cds. |
