PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g030970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 313aa    MW: 35214.3 Da    PI: 9.6802
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g030970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.43.9e-2367147286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++e+l+Lie  +e++++++rg lk ++Wee++ ++ ++ g+ rs++qC++k+e+l+kr++ ++++++       s +p+++q+e
  Csa01g030970.1  67 WTHDETLLLIESFKEKWDAIGRGPLKSNHWEEIAVAVsARSGVDRSATQCRHKIEKLRKRFRSERQSMGPI-----SIWPFYNQME 147
                     ***********************************998899****************************84.....68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.4E-2067149No hitNo description
PROSITE profilePS500906.64467124IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MATPSPTSSP PSDSNPNSAA TPPDQIQQQP SPPQPTDPSS PPPSHSTVIA LAATTSSVAR  60
KTQPVLWTHD ETLLLIESFK EKWDAIGRGP LKSNHWEEIA VAVSARSGVD RSATQCRHKI  120
EKLRKRFRSE RQSMGPISIW PFYNQMEEMD SNPAPISARP LTRLPPNSNK HFQDDEEEDQ  180
EEEDNYEEEE EDERQSKSRS INYILRRPGT VNRFAGGGGG LLSWGQRERS SKRKRNKDGG  240
DGGERRRKGA RAVAAEIRAF AERVMVMEKK KMEFAKETVR LRKEMEIRRI NLMQTSQAQL  300
LQFLNSSFGS SF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232247RKRNKDGGDGGERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g030970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513803.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLR0I4461e-168R0I446_9BRAS; Uncharacterized protein
STRINGXP_010513803.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-120Trihelix family protein