PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g030590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 340aa    MW: 38266.7 Da    PI: 5.7477
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g030590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.3e-35211132103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y++++d++++ li+w    nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++
  Csa01g030590.1  21 FIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQKHLLRN 106
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  Csa01g030590.1 107 IARRKHA 113
                     ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.0E-5517110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-3718110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-3318110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.4E-3021110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEDDNNNTNT NTNTNNVIAP FIVKTYQMVN DPSTDWLITW GPAHNSFIVV DPLDFSQRIL  60
PAYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEHFLRGQ KHLLRNIARR KHARGMYGQD  120
LEDGEIVREI ERLKEEQREL EAEIQKMNQR IEATERRPEQ MMAFLYKVVE DPDLLPRMML  180
EKERTKKLVS DKKKRRVTMS STVKAEEEEV LEEDEGRVFR VISSSPSPSS TENLYRNHSP  240
ESSLGWCVPI TQQGQFGNYE TGLVANSMIS TSSSSTSSSL TSTLSLPESV NGGGGGGGGG  300
CGSIQGEARY KETSTFGGVA ESNPPTTPPY PFSLFRGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-251811026129Heat shock factor protein 1
5d5v_B1e-251811026129Heat shock factor protein 1
5d5v_D1e-251811026129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195KKKRR
2191196KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g030590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513559.10.0PREDICTED: heat stress transcription factor C-1-like isoform X1
SwissprotQ9LV521e-175HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLR0HIW01e-177R0HIW0_9BRAS; Uncharacterized protein
STRINGXP_010513564.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-173heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]