PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g030470.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 335aa MW: 39151.1 Da PI: 4.4442

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g030470.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.1	2.6e-14	93	177	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s +qC+ ++nl+++y+k+k +k + ss++++f++l+ Csa01g030470.1 93 WREQEAFVLLEIWGDRFLQLGRRSLRNEDWNEVAEKVsEELRMEKSETQCRRMIDNLKRKYRKEKIKVEK-SGLGSSKWAFFNKLD 177 ***********************************788899*****************977776.478999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-20	92	178	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGDSEDETGY PKKFYSLNRQ SHPMYSRPIP KRHAYYHEEE DEDEVDGDEE EPQGGGGYSR 60 GNERFQKRQK PNKPVASGYD FAGPSDGKVG YDWREQEAFV LLEIWGDRFL QLGRRSLRNE 120 DWNEVAEKVS EELRMEKSET QCRRMIDNLK RKYRKEKIKV EKSGLGSSKW AFFNKLDMLL 180 CVSPKSDLGL ACGVDSGEFV FMNTKVYLDK SNGFDEMMDS PGDSEEEEDE EDEVDYERKK 240 FNDAASYKML ADSVERFGKV YEKMEKSKKD QMKELEKMRA DFQKDLELQK KQIVDRAQSE 300 IARLREEEEN YHRGDDESED EEMENNSDVN LSDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g030470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK220644	0.0	AK220644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-59-N16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010513519.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	D7L537	0.0	D7L537_ARALL; Uncharacterized protein
STRING	XP_010513519.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	0.0	Trihelix family protein