 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa01g030470.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
Trihelix |
| Protein Properties |
Length: 335aa MW: 39151.1 Da PI: 4.4442 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa01g030470.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 45.1 | 2.6e-14 | 93 | 177 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s +qC+ ++nl+++y+k+k +k + ss++++f++l+
Csa01g030470.1 93 WREQEAFVLLEIWGDRFLQLGRRSLRNEDWNEVAEKVsEELRMEKSETQCRRMIDNLKRKYRKEKIKVEK-SGLGSSKWAFFNKLD 177
*************************************788899*********************977776.478999*******97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MGDSEDETGY PKKFYSLNRQ SHPMYSRPIP KRHAYYHEEE DEDEVDGDEE EPQGGGGYSR 60
GNERFQKRQK PNKPVASGYD FAGPSDGKVG YDWREQEAFV LLEIWGDRFL QLGRRSLRNE 120
DWNEVAEKVS EELRMEKSET QCRRMIDNLK RKYRKEKIKV EKSGLGSSKW AFFNKLDMLL 180
CVSPKSDLGL ACGVDSGEFV FMNTKVYLDK SNGFDEMMDS PGDSEEEEDE EDEVDYERKK 240
FNDAASYKML ADSVERFGKV YEKMEKSKKD QMKELEKMRA DFQKDLELQK KQIVDRAQSE 300
IARLREEEEN YHRGDDESED EEMENNSDVN LSDE*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK220644 | 0.0 | AK220644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-59-N16. |
