PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g029900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 894aa    MW: 100284 Da    PI: 5.4313
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g029900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53.1e-334195155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Csa01g029900.1 41 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 95
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.5413898IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-323896IPR009057Homeodomain-like
SuperFamilySSF466893.05E-164096IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-234196IPR006447Myb domain, plants
PfamPF002497.1E-74393IPR001005SANT/Myb domain
PfamPF143794.9E-26139185IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
SuperFamilySSF474734.3E-19345416IPR011992EF-hand domain pair
PROSITE profilePS5022213.23346381IPR002048EF-hand domain
Gene3DG3DSA:1.10.238.108.4E-15348470IPR011992EF-hand domain pair
PfamPF134993.7E-7350409IPR002048EF-hand domain
SMARTSM000540.0012350378IPR002048EF-hand domain
CDDcd000513.64E-10351411No hitNo description
PROSITE patternPS000180359371IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS502225.587395417IPR002048EF-hand domain
SuperFamilySSF474734.3E-19443486IPR011992EF-hand domain pair
PfamPF143798.0E-13528556IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene3DG3DSA:1.10.238.107.4E-23716880IPR011992EF-hand domain pair
PROSITE profilePS5022213.23717752IPR002048EF-hand domain
SuperFamilySSF474734.4E-26719888IPR011992EF-hand domain pair
PfamPF134993.7E-7721780IPR002048EF-hand domain
SMARTSM000540.0012721749IPR002048EF-hand domain
CDDcd000513.64E-10722782No hitNo description
PROSITE patternPS000180730742IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS502225.587766788IPR002048EF-hand domain
PROSITE profilePS502227.902809844IPR002048EF-hand domain
SMARTSM0005428813841IPR002048EF-hand domain
PROSITE profilePS502225.81857883IPR002048EF-hand domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MYSAIRSLPL DGGHVGADYH GPLDGTNLPG DACLVLTTDP KPRLRWTSEL HERFVDAVTQ  60
LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKFRLGRQAC KESTENSKDA SCVGESQDTG  120
SSSTSSLRLA QQEQNEGYQV TEALRAQMEV QRRLHEQLEV QRRLQLRIEA QGKYLQSILE  180
KACKAFDEQA AAFAGLEAAR EELSELAIKV SNVSQGTTVP FFDATKMMMM PSLSELAVAI  240
DNKNNITTNC SVESSLTSVT NGSSISAASM KKRQRGDNMG VGYESGWIMP SRSMICCCVK  300
SENNKKYAEL DAKLARKMVE SRRIYPGHKS LKSMDSIIMK FPKLREGLRN IRNVFESYDN  360
DSNGTIDIEE LKKCLEELQL SLSDEEVKGL YGWCDVDGSK GIQFNEFIVL LCLIYLLSKP  420
SSESNAESRE MGPKLVESIF DPIVEVFLFL DKDEEMDWGR KGKVGFREFL FAFMSWVGLD  480
DADDYYMNRL GLQSHQLCIR TRDYRGVGYG GSDTLDATMI IVLLYDKHLE VQRRLQLRIE  540
AQGKYLQSIL EKACKAFDEQ AAAFAGLEAA REELSELAIK VSNVSQGTTV PFFDATKMMM  600
MPSLSELAVA IDNKNNITTN CSVESSLTSV TNGSSISAAS MKKRQRGDNM GVGYESGWIM  660
PSRSMICCCV KSENNKKYAE LDAKLARKMV ESRRIYPGHK SLKSMDSIIM KFPKLREGLR  720
NIRNVFESYD NDSNGTIDIE ELKKCLEELQ LSLSDEEVKG LYGWCDVDGS KGIQFNEFIV  780
LLCLIYLLSK PSSESNAESR EMGPKLVESI FDPIVEVFLF LDKDGKGKLN KADVIKTLNN  840
EDYPLERSPS HVTNMRFEEM DWGRKGKVGF REFLFAFMSW VGLDDADDYY MNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-194197258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-194197258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-194197258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-194197258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-194197258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-194197258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-194197258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-194197258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g029900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503550.0AY050355.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
GenBankAY0884280.0AY088428.1 Arabidopsis thaliana clone 6626 mRNA, complete sequence.
GenBankAY0940460.0AY094046.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566744.10.0Homeodomain-like superfamily protein
SwissprotQ94A570.0PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A3P6FF680.0A0A3P6FF68_BRAOL; Uncharacterized protein
STRINGBo1g101090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM740822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.10.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]