PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 141aa MW: 16334.7 Da PI: 8.8672

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g027760.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.2	1.3e-20	19	70	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+++AeIrdps ng +r +lg+f taeeAa+a+++a+ +l+g+ Csa01g027760.1 19 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFNLRGH 70 69*****.******98887..************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	2.2E-25	1	125	IPR017392	AP2/ERF transcription factor ERF/PTI6
CDD	cd00018	4.72E-28	18	78	No hit	No description
PROSITE profile	PS51032	24.684	19	77	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.0E-31	19	79	IPR001471	AP2/ERF domain
SMART	SM00380	7.3E-37	19	83	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-23	19	78	IPR016177	DNA-binding domain
Pfam	PF00847	6.4E-15	19	70	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-11	20	31	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-11	43	59	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MESSNRRSNN QSHDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEEAARAY 60 DRAAFNLRGH LAILNFPNEY YSRMDDYSLR PPYASSSSSS SGSTSTNVSR QSQREVFEFE 120 YLDDRVLEEL LDSEERNRRN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-33	17	126	12	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g027760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB025608	1e-176	AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBank	AJ580377	1e-176	AJ580377.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding protein.
GenBank	CP002686	1e-176	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010512193.1	1e-97	PREDICTED: ethylene-responsive transcription factor ERF098
Swissprot	Q9LTC5	2e-74	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	R0HQU3	1e-79	R0HQU3_9BRAS; Uncharacterized protein
STRING	XP_010512193.1	5e-97	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-59	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]