PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g026040.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CPP

Protein Properties

Length: 1217aa MW: 132639 Da PI: 6.411

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g026040.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.6	8.1e-16	309	347	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Csa01g026040.1 309 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 347 689**********************************96 PP
2	TCR	50.1	5.3e-16	394	432	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Csa01g026040.1 394 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 432 589***********************************7 PP
3	TCR	49.5	8.4e-16	920	958	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Csa01g026040.1 920 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 958 689**********************************96 PP
4	TCR	50.3	4.8e-16	1005	1043	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Csa01g026040.1 1005 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNV 1043 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.4E-19	308	349	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.223	309	434	IPR005172	CRC domain
Pfam	PF03638	1.3E-11	311	346	IPR005172	CRC domain
SMART	SM01114	3.7E-17	394	435	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.1E-11	396	432	IPR005172	CRC domain
SMART	SM01114	2.4E-19	919	960	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.578	920	1045	IPR005172	CRC domain
Pfam	PF03638	1.3E-11	922	957	IPR005172	CRC domain
SMART	SM01114	1.9E-17	1005	1046	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.8E-11	1007	1042	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1217 aa Download sequence Send to blast
MDTPQKSITQ IGTPVSKLKS EDSPVFNYIC NLSPIKTLKS IPIAQTLSSL NFTSPPSVFS 60 SPHAVSHKES RFRSQINKDV AASVGEEVEE EALIGNEPSQ NVKNDFSTPK VSNDVRGGGN 120 GSCEDGGMDL LKICDNVKKK SDTPDWETLI AATTELIYGS PSESEAFSCL LKRRSNSGAR 180 VRGGGGTMST SAPVSSTVVG NNETESFDAN SILHRGVRRR CLDFEVPGNN QQTLGESSSS 240 CVVPSIGLHL NAIAMSSKEN NNVPNEYSLS GNVKVGLQSS TSPVLHSQQD AVQAVEERKS 300 EQSGEGESSC KRCNCKKSKC LKLYCECFAA GVYCIEPCSC IDCFNKPIHE DVVLATRKQI 360 ESRNPLAFAP KVIRNSDSII EVGDDTSKTP ASARHKRGCN CKKSNCLKKY CECYQGGVGC 420 SINCRCEGCK NAFGRKDGSL FEQDEENEVS GKRVTAKTQQ NAELFNPVAP PSTPIPYRQP 480 LSQLAISSNN RLLPPVSHFH HGASGSSSSG IYNIRKPDMS MVSHSRIETI TEDIDDDDDM 540 PENLLNHSPM TNMKAVDSPV FNYISNLSPI ESVKSISTAQ TFSSLSFTSP PPVFTSPHVS 600 SHRESRFFRC HNSIDRTKPL EDLNGSVCKE EVEVPVIEDL NKEAPLEDEE EETSVETSSE 660 LPQILKSDSQ TPDRSDSPCT DDVTVEAPSD IPLGEGGSSS DDVKMGLQKM LDVREANDTP 720 NCGRLISDAT ELLVFRSPND SEAFRCLVDK ISSSERRFCA GVKSTKRPDI NKAVPVNGSS 780 NENEPLAVLP NESVFSLHRG GMRRRCLDFE MPGKRKKEIA DDQQSVCDNK AAGESSSRCV 840 VPSIGLHLNA VALSARDSNI NVVHDYSISG EIQKSFSGST TPIHSQDTVQ ETSDQAENEP 900 VEEVPRALVR VSEPAGEGES CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CIDCFNKPVH 960 EETVLATRKQ IESRNPLAFA PKVIRSADSI MEAGDDASKT PASARHKRGC NCKKSNCLKK 1020 YCECYQGGVG CSINCRCEGC KNVFGRKEGA LLAIMESKQE EDQETYEKRR AKIQHKIEGS 1080 SEVEQNPSSD QPSTPLPPYR HLVVHQPFLS KNRLPPTQFF IGMGSSSFRK QDSDLTQSHN 1140 GKKPVDPVTE DKTEIMPEIL LNSPIANNKA ISPNSKRVSP PQLGSSESGS NLRRRGNGRK 1200 LILRSIPAFP SLNPNQ*

Sequence ? help Back to Top

Protein Sequence Length: 1217 aa Download sequence Send to blast

MDTPQKSITQ IGTPVSKLKS EDSPVFNYIC NLSPIKTLKS IPIAQTLSSL NFTSPPSVFS  60
SPHAVSHKES RFRSQINKDV AASVGEEVEE EALIGNEPSQ NVKNDFSTPK VSNDVRGGGN  120
GSCEDGGMDL LKICDNVKKK SDTPDWETLI AATTELIYGS PSESEAFSCL LKRRSNSGAR  180
VRGGGGTMST SAPVSSTVVG NNETESFDAN SILHRGVRRR CLDFEVPGNN QQTLGESSSS  240
CVVPSIGLHL NAIAMSSKEN NNVPNEYSLS GNVKVGLQSS TSPVLHSQQD AVQAVEERKS  300
EQSGEGESSC KRCNCKKSKC LKLYCECFAA GVYCIEPCSC IDCFNKPIHE DVVLATRKQI  360
ESRNPLAFAP KVIRNSDSII EVGDDTSKTP ASARHKRGCN CKKSNCLKKY CECYQGGVGC  420
SINCRCEGCK NAFGRKDGSL FEQDEENEVS GKRVTAKTQQ NAELFNPVAP PSTPIPYRQP  480
LSQLAISSNN RLLPPVSHFH HGASGSSSSG IYNIRKPDMS MVSHSRIETI TEDIDDDDDM  540
PENLLNHSPM TNMKAVDSPV FNYISNLSPI ESVKSISTAQ TFSSLSFTSP PPVFTSPHVS  600
SHRESRFFRC HNSIDRTKPL EDLNGSVCKE EVEVPVIEDL NKEAPLEDEE EETSVETSSE  660
LPQILKSDSQ TPDRSDSPCT DDVTVEAPSD IPLGEGGSSS DDVKMGLQKM LDVREANDTP  720
NCGRLISDAT ELLVFRSPND SEAFRCLVDK ISSSERRFCA GVKSTKRPDI NKAVPVNGSS  780
NENEPLAVLP NESVFSLHRG GMRRRCLDFE MPGKRKKEIA DDQQSVCDNK AAGESSSRCV  840
VPSIGLHLNA VALSARDSNI NVVHDYSISG EIQKSFSGST TPIHSQDTVQ ETSDQAENEP  900
VEEVPRALVR VSEPAGEGES CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CIDCFNKPVH  960
EETVLATRKQ IESRNPLAFA PKVIRSADSI MEAGDDASKT PASARHKRGC NCKKSNCLKK  1020
YCECYQGGVG CSINCRCEGC KNVFGRKEGA LLAIMESKQE EDQETYEKRR AKIQHKIEGS  1080
SEVEQNPSSD QPSTPLPPYR HLVVHQPFLS KNRLPPTQFF IGMGSSSFRK QDSDLTQSHN  1140
GKKPVDPVTE DKTEIMPEIL LNSPIANNKA ISPNSKRVSP PQLGSSESGS NLRRRGNGRK  1200
LILRSIPAFP SLNPNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-16	311	1043	12	121	Protein lin-54 homolog
5fd3_B	2e-16	311	1043	12	121	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	802	816	RRRCLDFEMPGKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g026040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF204059	0.0	AF204059.1 Arabidopsis thaliana CXC domain protein TSO1 (TSO1) mRNA, complete cds.
GenBank	AF206324	0.0	AF206324.1 Arabidopsis thaliana putative DNA binding protein (tso1) mRNA, tso1-3 allele, complete cds.
GenBank	AY046019	0.0	AY046019.1 Arabidopsis thaliana putative DNA binding protein (At3g22780) mRNA, complete cds.
GenBank	AY142642	0.0	AY142642.1 Arabidopsis thaliana putative DNA binding protein (At3g22780) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010511676.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like
Swissprot	Q9LUI3	0.0	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	M4CCF4	0.0	M4CCF4_BRARP; Uncharacterized protein
STRING	Bra001884.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]