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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g024000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YA | ||||||||
Protein Properties | Length: 295aa MW: 32596 Da PI: 9.9014 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105 | 6.4e-33 | 156 | 212 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF Csa01g024000.1 156 QEPVFVNAKQYQAILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 212 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.9E-36 | 154 | 215 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.437 | 155 | 215 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.0E-28 | 157 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.2E-24 | 158 | 180 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 160 | 180 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 9.2E-24 | 189 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MHSKSESGEK IDSEVHRASS SSINSLNLWQ RAAAACNANS VMEAGDKPSK FIALESNGSK 60 SPSNRDDKVN KERNVTTSPH SAGDYSDKNQ EPMHTGINQP PHPQLVGHTV GWTSSNPYQD 120 PYYAGVMGAY GHHPLGFVPY GGMPHSRMPL PPEMAQEPVF VNAKQYQAIL RRRQARAKAE 180 LEKKLIKSRK PYLHESRHQH AMRRPRGTGG RFAKKTNTEA SQRKAKEKTN GSITQSPTSS 240 NSDQGEAWNV EYRTPQGDEM QSSAYNRREE GECSGQQWNS LSSNHPSQAC LAIK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-18 | 156 | 212 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g024000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF412056 | 0.0 | AF412056.1 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds. | |||
GenBank | AY087696 | 0.0 | AY087696.1 Arabidopsis thaliana clone 37744 mRNA, complete sequence. | |||
GenBank | AY093971 | 0.0 | AY093971.1 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509523.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 | ||||
Swissprot | Q945M9 | 0.0 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | R0G6A8 | 0.0 | R0G6A8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010509514.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13268 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 0.0 | nuclear factor Y, subunit A9 |
Publications ? help Back to Top | |||
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