PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g023970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 351aa    MW: 40044.2 Da    PI: 6.8491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g023970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-05194213120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  Csa01g023970.1 194 FTCPLCFKTFNRYNNMQMHM 213
                     89*****************9 PP
2zf-C2H214.69.8e-05278300123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  CgksF  k + ++H +++
  Csa01g023970.1 278 FACRRCGKSFAVKGDWRTHEKNC 300
                     78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66194221IPR007087Zinc finger, C2H2
SMARTSM003550.39194216IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-5194213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
SuperFamilySSF576672.6E-6264298No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5265298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767278298IPR007087Zinc finger, C2H2
SMARTSM0035567278298IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSDPACIFNN GYVDYYDYSF NYSTSLSRIY NSHGNFYYPH HTTNPNINTN HHNPTSPDSP  60
PLREALPLLS LSPIHKHQEP IVDHQREYYF METTETSSNS NFLDHDLDQR QETHHHDVTV  120
DLHLGLPNLG DGGSSSSDVV LDSTDDQEHH QDQGVEFTLA SDHDDGHGGL QRGNHLHHFW  180
IPTPSQILMG PTQFTCPLCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT QPTAMLKLPC  240
YCCAPGCKNN IDHPRARPLK DFRTLQTHYK RKHGVRPFAC RRCGKSFAVK GDWRTHEKNC  300
GKLWYCSCGS DFKHKRSLKD HVKAFGNGHV PCCGIDHEDE EAASDVEQQE *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g023970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092955.10.0PREDICTED: zinc finger protein WIP4
RefseqXP_019096225.10.0PREDICTED: zinc finger protein WIP4
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLR0HTF90.0R0HTF9_9BRAS; Uncharacterized protein
STRINGCagra.10399s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]