PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g022610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 285aa    MW: 30715.5 Da    PI: 8.8158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g022610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012114136123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk F++   L  H  +H
  Csa01g022610.1 114 YKCSVCGKAFPSYQALGGHKASH 136
                     9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-9113136No hitNo description
Gene3DG3DSA:3.30.160.602.6E-4114136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-13114137IPR007087Zinc finger, C2H2
SMARTSM003550.0043114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.801114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-9170197No hitNo description
PfamPF139129.5E-14175199IPR007087Zinc finger, C2H2
SMARTSM003550.17175197IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099175197IPR007087Zinc finger, C2H2
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MALEAMNSPS SFTTRIETKE DLMNDAVFME PWLKRKRSKR QRSHSPSSSS SSPPRSRPKS  60
QNHQDLTEEE YLALCLLMLA KDQPSSTTTQ TRFHHSQPQT QTPPPESSKT LSSYKCSVCG  120
KAFPSYQALG GHKASHRIKP PTVTPNPDDP SSTGAPTVSA VAGDKHPISA SGKIHECSIC  180
HKVFPTGQAL GGHKRCHYEG NLGGGGGSKS VSHSGSVSST VSEERSNRGF IDLNLPALPE  240
LSLHHNPISA ADEEILSPLT GKKPLLLTDH DQVIKKEADL SLRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13239LKRKRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g022610.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507810.10.0PREDICTED: zinc finger protein AZF2-like
SwissprotQ9SSW21e-129AZF2_ARATH; Zinc finger protein AZF2
TrEMBLD7LA101e-126D7LA10_ARALL; Uncharacterized protein
STRINGXP_010507810.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-116zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]