PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g022390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 399aa    MW: 44651.1 Da    PI: 7.6438
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g022390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94e-09109133126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+ C  f++ GtC+ G+ C+FaHg
  Csa01g022390.1 109 YKTRMCAKFRA-GTCRNGELCNFAHG 133
                     9**********.*************8 PP
2zf-CCCH19.61.6e-062022161125
                     GTS.--TTTTT-SS-S CS
         zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                       G +C+yGdrC+F+H
  Csa01g022390.1 202 F-GeECPYGDRCNFIH 216
                     5.449*********** PP
3zf-CCCH43.94e-14282308127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ f  tG+C++Gd+C+FaHg+
  Csa01g022390.1 282 WKTRLCMKFEITGQCPFGDKCHFAHGQ 308
                     8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.1E-15106141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-8107139IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793108135IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5109133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-6191218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577191219IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033191218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-8193219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-10277312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-15279311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507281309IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7281308IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-11282308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPYGGW NQNQMMDSTV NPMNNEQGDL HSLSESQSQS SQQLQQQPSL  60
KRPRLADDNV FNLPTSSFPP PTPTSSNPWM VPSLNPPPPV NKGTANIFYK TRMCAKFRAG  120
TCRNGELCNF AHGIEDLRQP PSNWQEIVGP PAQDRDRERE RERERERERE RERPVLAPVG  180
NNNREDDQKI ILRMKLCRKF CFGEECPYGD RCNFIHEELS KFREDSGKLR ETSVISVGTT  240
AADQPSVDNG TAFSHMEVVN RQGSIPVPAP MSNGGVVKTV YWKTRLCMKF EITGQCPFGD  300
KCHFAHGQAE LHNSVGRVEG EAVNAVASVS KQTVVPANES FAMKPTAQVI ADSSGLNEEG  360
RRKKCLLKWS DSKKINRIYG DWIDDLPVGQ KSTKPVES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162172RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g022390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372260.0AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
GenBankAY0817450.0AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507670.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLR0HYU20.0R0HYU2_9BRAS; Uncharacterized protein
STRINGXP_010507670.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.10.0C3H family protein