PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g021400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 428aa MW: 48552.8 Da PI: 8.4865 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127 | 2e-39 | 193 | 359 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceae 76 + ++drhski T+ g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i +++++ s Csa01g021400.1 193 PSRTDRHSKIKTANGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEITKIAKShshrcgfssgeesqnrpalgS---------- 277 5799************************************************************666666666555555555542.......... PP TCP 77 sssssasnsssg................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137 ++++ + k+k+++ ++ +l+k++rakar+ra++rt ekm++k +++ Csa01g021400.1 278 -----------MdassslceltsmwtvddrgsnsnttettgnkvDERSMKGKRKRPEPRTPILKKLSKDERAKARERAKDRTIEKMMMKGRSQ 359 ...........1222233333333333333344455677788877777777999999999999*************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-41 | 194 | 355 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.377 | 195 | 253 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.929 | 334 | 351 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MLSLIFLAFF FVCLKKILVQ VSFSKFCLRV FLILILLLQN PPKKDMNNNT FSTSTTISVD 60 DYMLFPYNDH YSSTPVLIPF SPSSSIDDIL IHSTSNTSNN NLDHHHQFLQ PSPFPQFEFD 120 PDCALLDSFL PLNNGHDDNQ TVSTDNHRPS LHLPSNNTIG DQPIEPSETI THIEDSQTIS 180 TSQDPKMKKA KKPSRTDRHS KIKTANGTRD RRMRLSLDVA KELFGLQDML GFDKASKTVE 240 WLLTQAKPEI TKIAKSHSHR CGFSSGEESQ NRPALGSMDA SSSLCELTSM WTVDDRGSNS 300 NTTETTGNKV DERSMKGKRK RPEPRTPILK KLSKDERAKA RERAKDRTIE KMMMKGRSQS 360 VNVVEEEVHH QGEIVKNDII NKMNSSFPMI SHHRSQGAAN SIEQQQFTDL HHHFSGNPRD 420 LMYKYNY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g021400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019096273.1 | 0.0 | PREDICTED: transcription factor TCP18-like isoform X1 | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | A0A178VH08 | 0.0 | A0A178VH08_ARATH; TCP18 | ||||
STRING | XP_010506976.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-170 | TCP family protein |