PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g020850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 764aa    MW: 86665.5 Da    PI: 7.2339
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g020850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09400444246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+ Ed+ l++ +++ G  +W  Ia  +g++Rt+ qc  r+q 
   Csa01g020850.1 400 GPWTEAEDKNLLRIIEEKGLTDWLDIAVSLGTNRTPFQCLARYQR 444
                      89*****************************************96 PP
2Myb_DNA-binding42.71.3e-13452496146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ WT+eEd++l  av+++G ++W ++a+ +  gRt+ qc +rw k
   Csa01g020850.1 452 KKEWTAEEDDQLRGAVELFGDKDWQSVANVLK-GRTGPQCSNRWKK 496
                      679****************************9.***********98 PP
3Myb_DNA-binding53.46e-17503548147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +grW+ eEd++ + av+++G+ +W++I++ ++ gRt+ qc++rw + 
   Csa01g020850.1 503 KGRWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTATQCRERWVNC 548
                      79******************************.***********986 PP
4Myb_DNA-binding47.44.4e-15555599147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+WT+eEde+l +a++++G   W+++a+ +   Rt++qc  rw ++
   Csa01g020850.1 555 RGKWTKEEDEKLREAIAKHGYS-WSKVASDLS-CRTDNQCLRRWKTL 599
                      89******************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.879300393IPR017877Myb-like domain
SMARTSM0071722304395IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-5307323IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-5369403IPR009057Homeodomain-like
SuperFamilySSF466895.19E-14377443IPR009057Homeodomain-like
PROSITE profilePS5129410.099394446IPR017930Myb domain
SMARTSM007174.1E-9398448IPR001005SANT/Myb domain
CDDcd001671.21E-6401446No hitNo description
PfamPF139211.7E-12402463No hitNo description
Gene3DG3DSA:1.10.10.605.5E-14404454IPR009057Homeodomain-like
SuperFamilySSF466895.46E-20431501IPR009057Homeodomain-like
PROSITE profilePS5129420.095447502IPR017930Myb domain
SMARTSM007176.1E-13451500IPR001005SANT/Myb domain
CDDcd001671.16E-10454498No hitNo description
Gene3DG3DSA:1.10.10.605.5E-16455501IPR009057Homeodomain-like
SMARTSM007175.2E-14502551IPR001005SANT/Myb domain
PROSITE profilePS5129413.459503549IPR017930Myb domain
PfamPF002494.7E-15503548IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-19504553IPR009057Homeodomain-like
CDDcd001675.11E-11505547No hitNo description
SuperFamilySSF466898.63E-26529604IPR009057Homeodomain-like
PROSITE profilePS5129426.879550604IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-19554599IPR009057Homeodomain-like
SMARTSM007174.1E-13554602IPR001005SANT/Myb domain
PfamPF002498.2E-14555599IPR001005SANT/Myb domain
CDDcd001674.34E-11557599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MPSDSENEDD FEMLRSIRSQ LPSSKDAELS SGPPVGLSLP SDSESEDDFE MIRSITSQLA  60
LSMDVPIPPI GLSDDDDDED GAFETLRVIR RRFSAYANFD TEGNFMNDSA GKKKQVHDSD  120
NEPSREILSR SNTCESFPDH GKSIVTVPDS EDVQDGHSAD VHEITSAEPH DHLETSQLSL  180
MPGSSTFPEA AQAFVDAIRK NRAYQKFLRR KLEVIEATIE QNEKHKKNVK IVKDFQASCK  240
RITKLALVQR KDPRVELIST RKSVPCDSSE GNDKKTSPLL LGPPENPCVA DYRMALEKYP  300
VSVERRKWST EENKNLAKGL KQEVQKILLY EAIEQSSDLE GSTYDIDAIN ESIRNLEITP  360
EMIRQFLPKI NWDSLDIKDR SAAECEARWM SSEDPLINHG PWTEAEDKNL LRIIEEKGLT  420
DWLDIAVSLG TNRTPFQCLA RYQRSLNASI LKKEWTAEED DQLRGAVELF GDKDWQSVAN  480
VLKGRTGPQC SNRWKKSLRP TRKGRWSLEE DKRVKVAVTL FGSQNWHKIS QFVPGRTATQ  540
CRERWVNCLE PNLNRGKWTK EEDEKLREAI AKHGYSWSKV ASDLSCRTDN QCLRRWKTLY  600
PHQVALLQEA RRLRKEAIVG NFVDRESERP ALVTGAILAL PNISLEPEPV SVALKKKGKA  660
KRKKSDAERQ PKRRRKGLEK CSGDVCRQEN ETVCENEPNN GGEGRLLEVE PYNEIQDIGE  720
EKQRRRRKRV AATANNTTGL KKLTPKRRKV SAVVPIKNQD APN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-293795982156MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-293795982156MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1726748RKRVAATANNTTGLKKLTPKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g020850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0338270.0AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506400.10.0PREDICTED: snRNA-activating protein complex subunit 4-like isoform X2
TrEMBLR0G3G90.0R0G3G9_9BRAS; Uncharacterized protein
STRINGXP_010506392.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1