PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g019640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CAMTA
Protein Properties Length: 860aa    MW: 97894.8 Da    PI: 8.0111
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g019640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.62.9e-50311463118
            CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                     + k+rwl+++ei+aiL n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg+ e +++yYah+e+++tf rr
  Csa01g019640.1  31 EAKSRWLRPNEIHAILSNPKYFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGEDKTTFVRR 125
                     459******************************************************************************************** PP

            CG-1  98 cywlLeeelekivlvhylevk 118
                     cywlL++++e+ivlvhy++++
  Csa01g019640.1 126 CYWLLDKARENIVLVHYRDTQ 146
                     ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.64925151IPR005559CG-1 DNA-binding domain
SMARTSM010762.9E-7828146IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-4431144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.6E-6318403IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.2E-16319405IPR014756Immunoglobulin E-set
PfamPF018339.4E-6320404IPR002909IPT domain
PfamPF127961.9E-7509585IPR020683Ankyrin repeat-containing domain
CDDcd002042.22E-15513615No hitNo description
Gene3DG3DSA:1.25.40.201.9E-16518618IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.53E-17519622IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.99523588IPR020683Ankyrin repeat-containing domain
SMARTSM002484.5E-6556585IPR002110Ankyrin repeat
PROSITE profilePS5008811.808556588IPR002110Ankyrin repeat
SuperFamilySSF525401.43E-5697771IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.76705729IPR000048IQ motif, EF-hand binding site
PfamPF006120.22705721IPR000048IQ motif, EF-hand binding site
SMARTSM0001542720742IPR000048IQ motif, EF-hand binding site
SMARTSM000150.023743765IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.091744768IPR000048IQ motif, EF-hand binding site
PfamPF006120.015745765IPR000048IQ motif, EF-hand binding site
SMARTSM0001511818840IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.261819848IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MDGDGSGRLI GSEIHGFHTL QDLDVQTTLE EAKSRWLRPN EIHAILSNPK YFTINVKPVN  60
LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH LKVGNEERIH VYYAHGEDKT  120
TFVRRCYWLL DKARENIVLV HYRDTQEAAT SSGESNSSPI SVSDQTFPNR VAPENIDFSI  180
ENSRYLASNN SPVVRNHDIS LHDINTLDWD ELLIPTDLNN LSAPTVDDLS YFTEPLQNAA  240
NSSAEPVNVT VADESLDALL NNGPQSRESF GRWMNSFIGE SNDLLENPSF EPMVTHDPDP  300
LAPQALFHSH SNIPEQVFNV TDVSPAWAYS SEKTKILVTG FLQNNYQHLE RSNLFCTCGD  360
SCVPAEYVQA GVYRCIIPPH SPGMVNLYLS VDGSKPISQC FRFEHRSVPV LDKTIPEDNQ  420
ESKWEEFEFQ VRLSHLLFTS SNKLNVLSSK ISSTNLRDAK KLASKTSHLL NSWAYLLKSI  480
QGNKVSFDQA KDHLFELTLK NRLKEWLMEK VLEGRSTLDY DSKGLCVIHL CAILGYTWSI  540
QLFSLSGLSL NFRDKQGWTA LHWAAYYGRE KMVAALLSAG ARPNLVTDPT KNNLDGCMAS  600
DLAQQNGYDG LAAYLAEKCL VAQFRDMKIA GNISGNLEAC KAEMMNQGTL PEDEQSLKDA  660
LAAYRTAAEA AARIQGAFRE KALKAARSSV IQFANKEEEA KSIIAAMKIQ NAFRKYDTRR  720
KIEAAYMIQC RFQTWKMRRE YLKMRRQAIR IQAAFRGLQA RRQYKKIVWS VGVLEKAVLR  780
WRQKRKGFRG LQVAATEDSP GETEEDFYKT SQRQAEERLE RSVVRVQAMF RSKKAQQDYR  840
RMKLTHEETQ LEYDCLEDI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g019640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100270.0AY510027.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504823.10.0PREDICTED: calmodulin-binding transcription activator 6-like
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLR0G3E30.0R0G3E3_9BRAS; Uncharacterized protein
STRINGXP_010504823.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]