PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa01g019640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 860aa MW: 97894.8 Da PI: 8.0111 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 160.6 | 2.9e-50 | 31 | 146 | 3 | 118 |
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 + k+rwl+++ei+aiL n + +++ ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg+ e +++yYah+e+++tf rr Csa01g019640.1 31 EAKSRWLRPNEIHAILSNPKYFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGEDKTTFVRR 125 459******************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cywlL++++e+ivlvhy++++ Csa01g019640.1 126 CYWLLDKARENIVLVHYRDTQ 146 ******************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 73.649 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.9E-78 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.6E-44 | 31 | 144 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 6.6E-6 | 318 | 403 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 9.2E-16 | 319 | 405 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 9.4E-6 | 320 | 404 | IPR002909 | IPT domain |
Pfam | PF12796 | 1.9E-7 | 509 | 585 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.22E-15 | 513 | 615 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.9E-16 | 518 | 618 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 6.53E-17 | 519 | 622 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.99 | 523 | 588 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 4.5E-6 | 556 | 585 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.808 | 556 | 588 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.43E-5 | 697 | 771 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 6.76 | 705 | 729 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.22 | 705 | 721 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 42 | 720 | 742 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.023 | 743 | 765 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.091 | 744 | 768 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.015 | 745 | 765 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 11 | 818 | 840 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.261 | 819 | 848 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 860 aa Download sequence Send to blast |
MDGDGSGRLI GSEIHGFHTL QDLDVQTTLE EAKSRWLRPN EIHAILSNPK YFTINVKPVN 60 LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH LKVGNEERIH VYYAHGEDKT 120 TFVRRCYWLL DKARENIVLV HYRDTQEAAT SSGESNSSPI SVSDQTFPNR VAPENIDFSI 180 ENSRYLASNN SPVVRNHDIS LHDINTLDWD ELLIPTDLNN LSAPTVDDLS YFTEPLQNAA 240 NSSAEPVNVT VADESLDALL NNGPQSRESF GRWMNSFIGE SNDLLENPSF EPMVTHDPDP 300 LAPQALFHSH SNIPEQVFNV TDVSPAWAYS SEKTKILVTG FLQNNYQHLE RSNLFCTCGD 360 SCVPAEYVQA GVYRCIIPPH SPGMVNLYLS VDGSKPISQC FRFEHRSVPV LDKTIPEDNQ 420 ESKWEEFEFQ VRLSHLLFTS SNKLNVLSSK ISSTNLRDAK KLASKTSHLL NSWAYLLKSI 480 QGNKVSFDQA KDHLFELTLK NRLKEWLMEK VLEGRSTLDY DSKGLCVIHL CAILGYTWSI 540 QLFSLSGLSL NFRDKQGWTA LHWAAYYGRE KMVAALLSAG ARPNLVTDPT KNNLDGCMAS 600 DLAQQNGYDG LAAYLAEKCL VAQFRDMKIA GNISGNLEAC KAEMMNQGTL PEDEQSLKDA 660 LAAYRTAAEA AARIQGAFRE KALKAARSSV IQFANKEEEA KSIIAAMKIQ NAFRKYDTRR 720 KIEAAYMIQC RFQTWKMRRE YLKMRRQAIR IQAAFRGLQA RRQYKKIVWS VGVLEKAVLR 780 WRQKRKGFRG LQVAATEDSP GETEEDFYKT SQRQAEERLE RSVVRVQAMF RSKKAQQDYR 840 RMKLTHEETQ LEYDCLEDI* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa01g019640.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY510027 | 0.0 | AY510027.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504823.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 6-like | ||||
Swissprot | Q9LSP8 | 0.0 | CMTA6_ARATH; Calmodulin-binding transcription activator 6 | ||||
TrEMBL | R0G3E3 | 0.0 | R0G3E3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010504823.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4021 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16940.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
---|---|---|---|
|