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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa01g019530.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 695aa MW: 75696.4 Da PI: 6.4817 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 90.4 | 1.6e-28 | 239 | 292 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G ekA+Pk+ilelm+v+gLt+e+v+SHLQkYR+
Csa01g019530.1 239 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILELMNVPGLTRENVASHLQKYRI 292
79*******************.********************************7 PP
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| 2 | Response_reg | 75.5 | 2e-25 | 43 | 151 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93
vl+vdD+p+ +++l+++l + y ev+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ + G
Csa01g019530.1 43 VLVVDDDPTCLMILERMLMSCLY-EVTKCNRAELALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHG 135
89*********************.***************888889**********************6644.8********************** PP
ESEEEESS--HHHHHH CS
Response_reg 94 akdflsKpfdpeelvk 109
a d+l Kp+ +e+l +
Csa01g019530.1 136 AVDYLIKPVRMEALKN 151
***********99986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 3.8E-208 | 18 | 686 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 9.82E-36 | 39 | 187 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 3.0E-40 | 40 | 180 | No hit | No description |
| SMART | SM00448 | 2.6E-30 | 41 | 153 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 41.202 | 42 | 157 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 2.6E-22 | 43 | 151 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 3.90E-27 | 44 | 156 | No hit | No description |
| PROSITE profile | PS51294 | 11.54 | 236 | 295 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.68E-19 | 237 | 296 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 9.3E-30 | 238 | 297 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.4E-24 | 239 | 292 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.5E-8 | 241 | 291 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 695 aa Download sequence Send to blast |
MMNPSHGRGL GSAGGSSSGR NQVGGGGGGG ETVVEMFPSG LRVLVVDDDP TCLMILERML 60 MSCLYEVTKC NRAELALSLL RKNKHGFDIV ISDVHMPDMD GFKLLEHVGL EMDLPVIMMS 120 ADDSKSVVLK GVTHGAVDYL IKPVRMEALK NIWQHVVRKR RSEWSVPEHS GSIEETGDRH 180 LQQHRGGNAA ISGGEDAVDD NSSSVNEGNN WRSNSRKRKD EDGEEQGDDK DEDASNLKKP 240 RVVWSVELHQ QFVAAVNQLG VEKAVPKKIL ELMNVPGLTR ENVASHLQKY RIYLRRLGGV 300 SHHQGNLNNS FMTGQDASFG PLSTLNGFDL QALAVTGQLP AQSLAQLQAA GLGRPTMVSK 360 SGLPVSSIVD ERSIFSFENS KTRFGEGIGH HHGQQQPQQQ QPQMNLLHGV PTGLQQQLPL 420 GNRMSIQQQI AAVRAGHSVQ NSGMLMQSLP RGPPPMLTSS QSSIRQPMLS NRIPERSGFS 480 GRNNIPESSR VLPTGYTNHL TTQHSSSSLA YNNFQTELPV NSFPLASAPG LSAVPVRKTN 540 SYQEEVNSSE AGFATPSYDM FTTRQNDWDL RNIGIAFDSH QDAESAAFSN SEAYSSSSMS 600 RNNNTTSAAT EHVRNHQQQP HPGMVPHHQV YADGNSGSVR VKSERVAADS AAMAFHEQYS 660 NQEDLMSALL KQEGIAPVDG EFDFDAYSID NIPV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 1e-22 | 238 | 297 | 4 | 63 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa01g019530.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK176489 | 0.0 | AK176489.1 Arabidopsis thaliana mRNA for putative ARR1 protein, complete cds, clone: RAFL24-30-K07. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010504728.1 | 0.0 | PREDICTED: two-component response regulator ARR1 isoform X1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | R0HK04 | 0.0 | R0HK04_9BRAS; Two-component response regulator | ||||
| STRING | XP_010504728.1 | 0.0 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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