PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g019080.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 709aa    MW: 76059.8 Da    PI: 8.6987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g019080.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.1e-13133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
   Csa01g019080.2 133 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 177
                      7*******************************************9 PP
2Myb_DNA-binding40.85.1e-13454498347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
   Csa01g019080.2 454 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 498
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.101.2E-5220IPR001878Zinc finger, CCHC-type
SMARTSM003430.67420IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.516126182IPR017930Myb domain
SuperFamilySSF466892.02E-16128182IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17129180IPR006447Myb domain, plants
SMARTSM007171.5E-9130180IPR001005SANT/Myb domain
CDDcd001679.30E-9133178No hitNo description
PfamPF002491.9E-10133177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-10133176IPR009057Homeodomain-like
Gene3DG3DSA:4.10.60.101.2E-5321342IPR001878Zinc finger, CCHC-type
SMARTSM003430.67325341IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.516447503IPR017930Myb domain
SuperFamilySSF466892.02E-16449503IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17450501IPR006447Myb domain, plants
SMARTSM007171.5E-9451501IPR001005SANT/Myb domain
CDDcd001679.30E-9454499No hitNo description
PfamPF002491.9E-10454498IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-10454497IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGTCGGGGGG GGGGSCSSSA VKLFGVRLTD GSIIKKSASM  60
GNLSALAVAA AVATTHHRLS PSSPLATSNH NESPLSDHAR YSGLHHNEGY LSDDPAHGSG  120
SSHRRGERKR GIPWTEEEHR LFLVGLQKLG KGDWRGISRN YVTSRTPTQV ASHAQKYFIR  180
HTSSSRRKRR SSLFDMVTDE MVTDSSPTQE DQTVNRSSPS KELENKSYLP SLELSLNNTT  240
EPEAVIAKAP PQEQPEEAIE PSNGVSPMLV PGGFFPPCFP VTYTIWLPAT STSLQGTEHV  300
LEAETSSQXX XXXXXLCVFV RMTRRCSHCS NNGHNSRTCP TRGTCGGGGG GGGGGSCSSS  360
AVKLFGVRLT DGSIIKKSAS MGNLSALAVA AAVATTHHRL SPSSPLATSN HNESPLSDHA  420
RYSGLHHNEG YLSDDPAHGS GSSHRRGERK RGIPWTEEEH RLFLVGLQKL GKGDWRGISR  480
NYVTSRTPTQ VASHAQKYFI RHTSSSRRKR RSSLFDMVTD EMVTDSSPTQ EDQTVNRSSP  540
SKELENKSYL PSLELSLNNT TEPEAVIAKA PPQEQPEEAI EPSNGVSPML VPGGFFPPCF  600
PVTYTIWLPA TSTSLQGTEH VLEAETSSQQ HQVLKPKPGF AKERVNMDEL VGMSQLSIGM  660
GTRHETETSP SASPLSLKLE PSRPSAFHSN GSVNGAGLSK GNSAIQAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g019080.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0058320.0BT005832.1 Arabidopsis thaliana At3g16350 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504183.10.0PREDICTED: uncharacterized protein LOC104781253
TrEMBLR0HYV30.0R0HYV3_9BRAS; Uncharacterized protein
STRINGXP_010504183.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.10.0MYB_related family protein