PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g018810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CPP
Protein Properties Length: 419aa    MW: 45412.1 Da    PI: 5.5365
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g018810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.92.7e-1562100241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     ++kgC+Ck+skClk+YC+Cfa+g+ C++ C C dC+N+++
  Csa01g018810.1  62 KNKGCRCKQSKCLKLYCDCFASGVVCTD-CDCADCHNNSD 100
                     79**************************.********987 PP
2TCR51.61.8e-16146182440
             TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +gC+Ck+++ClkkYCeCf+a++ Cs++CkC dCkN  
  Csa01g018810.1 146 RGCKCKRTRCLKKYCECFQANVLCSDNCKCIDCKNVA 182
                     79*********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.8E-1661101IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.43162183IPR005172CRC domain
PfamPF036384.9E-126498IPR005172CRC domain
SMARTSM011142.0E-17143184IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.3E-13146180IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTDKVDSGEF ATEKNPKELV STKLELSSVI SDSNVEELPP ISREPSETKD TTDQDGVNTV  60
RKNKGCRCKQ SKCLKLYCDC FASGVVCTDC DCADCHNNSD NSDAREAALK SVLGRNPNAF  120
NGKSFTSLID KQCTAAPDTK LGLLSRGCKC KRTRCLKKYC ECFQANVLCS DNCKCIDCKN  180
VAEVFQPSVF APGLNNGKLH QGCDNPEKNI VRENIVSSLG FISSSRDSVG FNSSHITAGS  240
MNNAPGFSAH NSPQQRSSCP ALLFSIPDHS IQNALGSPIS SSPSPKLPYS KKKPPLGYTS  300
TLVPDLGDIC SLLLVASEST TVDAEDQNRI CIKTDDKVGN KCTELLCESE SGNVEEEIQS  360
FGRLIELIDA QYNGEEGSNK CKTKTGVHET DIYIEQERAV LATFRDCLQK FIKSILDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-20611839123Protein lin-54 homolog
5fd3_B6e-20611839123Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g018810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6530891e-132DQ653089.1 Arabidopsis thaliana clone 0000013135_0000009456 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102165.10.0PREDICTED: protein tesmin/TSO1-like CXC 8
SwissprotQ700D01e-171TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLD7L5L00.0D7L5L0_ARALL; Predicted protein
STRINGXP_010503872.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.11e-163Tesmin/TSO1-like CXC domain-containing protein