PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g016690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 464aa    MW: 49850.7 Da    PI: 10.101
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g016690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.31.1e-1485172186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      +++ ++ +qCk++++ ++k+yk++k +   +  + +s++++fd+l+
  Csa01g016690.1  85 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVssreDYGKIPKTDIQCKNRIDTVKKKYKQEKVRIATG--GGRSRWVFFDKLD 172
                     7*************************************8766667789999******************999987..66678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-2583174No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEDDEDIQSH GSDSPDPSSS PAAGRITVTV ASTGPPSYSL TPPANCSEQD PDALALALLP  60
IQASGGGGGG SSSGRPTGGG GREDCWSEGA TAVLIDAWGE RYLELSRGNL KQKHWKEVAE  120
IVSSREDYGK IPKTDIQCKN RIDTVKKKYK QEKVRIATGG GRSRWVFFDK LDRLIGSTAK  180
IPTATPGVSG GGGPGVGGGL HKIPMGIPMG TRSNLYHQQA KAAAAPPFNN LDRLMGATAR  240
VSAASFGGSG GGGGGGGGGS VNVPMGIPMS SRSTPFGQQG RTLPQQRRTL PQQRRTLPQQ  300
QQQGMMVKRC SESKRWRFKK RNASESDSES EAAMSDDSGD SLPPPPLSKR MKTEEKRKPD  360
GDGVGNKWTE LTRAIMRFGE AYEQTENAKL QQVVEMEKER MKFLKELELQ RMQFFVQTQL  420
EISQLKQQHG GRMGNTSNND HNSRKNNINA IVNNSNNNVG NNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248259SGGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g016690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006000.0AP000600.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2.
GenBankAY0721870.0AY072187.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBankAY1138530.0AY113853.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501737.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A178V8Z70.0A0A178V8Z7_ARATH; ASIL2
STRINGXP_010501737.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.10.0sequence-specific DNA binding transcription factors