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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g016500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YA | ||||||||
Protein Properties | Length: 253aa MW: 28616.2 Da PI: 10.2499 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.5 | 3.9e-32 | 137 | 193 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rakle+++kl +k rkpylheSRh+hAl+R+RgsgGrF Csa01g016500.1 137 NEPIFVNAKQYQAILRRRQHRAKLEAQNKL-IKVRKPYLHESRHRHALKRARGSGGRF 193 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.8E-36 | 135 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.5 | 136 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.3E-27 | 138 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.7E-23 | 139 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 141 | 161 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.7E-23 | 170 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEMMSTHFPR MKQTDFQLQD HDSSSTQSTG GESYSEVASL SEPNTRYGHN IVTHLSGYKE 60 NPENPIRSHC KSILSKVSQH SVVPPIEAAS WPLHSTETPH FNGYLSFPYA SQHTVQHPQI 120 GGLVPSRMLL PHNIPENEPI FVNAKQYQAI LRRRQHRAKL EAQNKLIKVR KPYLHESRHR 180 HALKRARGSG GRFLNTKKLQ ESKPPPFSGS PHVCKNSPGK FWQQDITGNN NDMFQQNGFS 240 GYPSNHHVSV LM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-20 | 137 | 197 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 186 | RHRHALKRAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g016500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493613 | 1e-179 | AB493613.1 Arabidopsis thaliana At3g14020 mRNA for hypothetical protein, partial cds, clone: RAAt3g14020. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019101730.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-6-like | ||||
Swissprot | Q9LVJ7 | 1e-135 | NFYA6_ARATH; Nuclear transcription factor Y subunit A-6 | ||||
TrEMBL | R0HNB9 | 1e-151 | R0HNB9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010487188.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14733 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 1e-138 | nuclear factor Y, subunit A6 |
Publications ? help Back to Top | |||
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