PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g016270.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 275aa MW: 31137.8 Da PI: 6.5005

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g016270.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.8	2.4e-40	38	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l + e+++am++++++++ara+dPv G++g+i+klq q+e +++el+ Csa01g016270.1 38 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQSDARANDPVDGCYGIIRKLQYQIEYTRNELK 132 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ Csa01g016270.1 133 IVLQQ 137 98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.473	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-37	38	134	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MPSGKPSSAF PLHPPKPTTP LKPSSSNSNT NTNSTNQACA ACKYQRRKCA PDCLLAPYFP 60 HDRHRQFLNA HKLFGVSNIT KIIKSLTPPE KDAAMHTIMF QSDARANDPV DGCYGIIRKL 120 QYQIEYTRNE LKIVLQQLAM FRDRAHHHQE TQIQIQEPED LSSFSSSCDL SNNSSIPYNY 180 PLNHHVVQEP NQQQQQQYCS SGNNFSGLQE DMWCLQLQDS STTVNMKAGF IDECEDIKPV 240 EEVSSERHEF EPHEAFVEQR KLDLPPSSQF IISS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-27	31	131	4	104	LOB family transfactor Ramosa2.1
5ly0_B	6e-27	31	131	4	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g016270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237328	0.0	AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010501352.1	0.0	PREDICTED: LOB domain-containing protein 22-like
Refseq	XP_019101715.1	0.0	PREDICTED: LOB domain-containing protein 22-like
Swissprot	Q9LRW1	1e-171	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	R0HMS1	1e-172	R0HMS1_9BRAS; Uncharacterized protein
STRING	XP_010501331.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-140	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]