PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g016210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 514aa MW: 56869.9 Da PI: 8.5617 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.5e-05 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Csa01g016210.1 103 FVCEICNKGFQRDQNLQLHRRGH 125 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 102 | 125 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.93E-6 | 102 | 125 | No hit | No description |
SMART | SM00355 | 0.017 | 103 | 125 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 103 | 125 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.2E-5 | 103 | 125 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 145 | 175 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.93E-6 | 175 | 200 | No hit | No description |
SMART | SM00355 | 180 | 180 | 200 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MMNKDMLLHQ HHHQPQQQVQ HQQDENMSNL TSASGGDQAS VSSGNITEAS GSNYFPHHQQ 60 QQQFCVPDLS QPQKKRRNQP GNPDPESEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL 120 HRRGHNLPWK LKQRSNKEVI RKKVYVCPEA TCVHHDPSRA LGDLTGIKKH FCRKHGEKKW 180 KCDKCSKKYA VQSDCKAHSK TCGTKEYRCD CGTLFSRRDS FITHRAFCEA LAEETAREVV 240 LPTQNQNSQP NPLVIRQSSS HPHHHQTQPN INVSSTSSPS HNIINSLHFE TNNGTSNGNS 300 SSNHLHTFPM KKEQQSNDHI INFHHNIPPW LAPQPLSHQP HDLTSSNPNP SNGGGRGLFS 360 LASPAMSATA LLQKAAQMGS TKTTTTDLER STHNNNLTTT MASMMTSSSG FINSNNNNQG 420 LFQDYNASGF DHHGGEEAFD DTFGGFLRTN EATTTASAAR SEKSKSGGGE SLTRDFLGLR 480 PLMSHNEILT FAGLGNCINS SASDQLHPKP WQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-32 | 176 | 245 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 2e-32 | 176 | 245 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 142 | KLKQRSNKEVIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00355 | DAP | Transfer from AT3G13810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g016210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361797 | 0.0 | AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. | |||
GenBank | AY091693 | 0.0 | AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010501280.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like isoform X2 | ||||
Refseq | XP_010501294.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like isoform X3 | ||||
Swissprot | Q9LRW7 | 0.0 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | A0A1J3FCK1 | 0.0 | A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment) | ||||
TrEMBL | A0A1J3JPP2 | 0.0 | A0A1J3JPP2_NOCCA; Protein indeterminate-domain 11 | ||||
STRING | XP_010501262.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 0.0 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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