PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g015750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 295aa    MW: 33727.2 Da    PI: 7.2508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g015750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-05124145223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  Cgk F + ++L  H+r+H
  Csa01g015750.1 124 RCCLCGKAFQTMHSLFGHMRRH 145
                     7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.24E-65377No hitNo description
SMARTSM003551.25577IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2245582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PfamPF139120.00565777IPR007087Zinc finger, C2H2
SuperFamilySSF576675.24E-6118145No hitNo description
SMARTSM003550.072123145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118123145IPR007087Zinc finger, C2H2
PfamPF139127.4E-4124147IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLKRIRDAYG DESSSSESEE FHRRKIGVKV NLPDERSEDE EDESSTQQQL PQRKHFCVIC  60
KKQFSSGKAY GGHVRIHSTE YNNKGKMKKK LKMTKKNKRK IGLVKKDKEK EIDLISTDME  120
GKIRCCLCGK AFQTMHSLFG HMRRHPDRSW KGIRPPPPQD KFKLSYLGDD DNDDDDEEEV  180
DGVMSRSMMM SRVTADVQEA AYILMMIAYT SSKYDGMKKA MESPKAEVRS SSCYKEKDKV  240
LGDDGMDDKK GLIVDMKIKM EIEVEVNDSP DEAKSPLGFD LNQPPYHEDH SYSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g015750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418991.10.0PREDICTED: uncharacterized protein LOC104704634
TrEMBLR0I2G71e-119R0I2G7_9BRAS; Uncharacterized protein
STRINGXP_010418991.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.15e-96C2H2 family protein