PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 447aa MW: 49281.1 Da PI: 6.7867

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g015240.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.5	2.2e-31	237	291	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fv+ v +L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl Csa01g015240.1 237 KPRMRWTPELHESFVKSVIKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 291 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-29	235	292	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.45E-16	236	291	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-23	237	292	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-7	239	290	IPR001005	SANT/Myb domain
Pfam	PF14379	5.2E-21	328	374	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MNRHSLVSTA PNECNKGVGQ ACLSSLPPVH NFLNVQPETR KSPFIRSQSP DSPGQLWSKN 60 TSQSTFSRSS TFCTNLYLSS SSTSETQKHL GNSLPFLPDP SSYSHSASGV ESARSPSVFT 120 EDLGNPYGGG DNSGSLVKDF LNLSGDACSD GGFHDFGCSN DSYCLSDQME LQFLSDELEL 180 AITDRAETPR LDEIYETPLA SSNPVTRLSP SQSCVAGAVS IDVVSSHPSP GSAANHKPRM 240 RWTPELHESF VKSVIKLEGP EKATPKAVLK LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE 300 EKKNENSEER KLALSNSEAD EKKKGAIQLI EALRMQMEVQ KQLHEQLEVQ RVLQLRIEEH 360 AKYLEKMLEE QRKTGRLICS SPSQTVLSPS DDSIPDSQNM SKTEATSPQP SPSKKKKASE 420 TEVNKCESPQ KRPRLENKAD LEGPNR*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MNRHSLVSTA PNECNKGVGQ ACLSSLPPVH NFLNVQPETR KSPFIRSQSP DSPGQLWSKN  60
TSQSTFSRSS TFCTNLYLSS SSTSETQKHL GNSLPFLPDP SSYSHSASGV ESARSPSVFT  120
EDLGNPYGGG DNSGSLVKDF LNLSGDACSD GGFHDFGCSN DSYCLSDQME LQFLSDELEL  180
AITDRAETPR LDEIYETPLA SSNPVTRLSP SQSCVAGAVS IDVVSSHPSP GSAANHKPRM  240
RWTPELHESF VKSVIKLEGP EKATPKAVLK LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE  300
EKKNENSEER KLALSNSEAD EKKKGAIQLI EALRMQMEVQ KQLHEQLEVQ RVLQLRIEEH  360
AKYLEKMLEE QRKTGRLICS SPSQTVLSPS DDSIPDSQNM SKTEATSPQP SPSKKKKASE  420
TEVNKCESPQ KRPRLENKAD LEGPNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-24	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-24	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-24	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-24	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-24	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-24	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-24	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-24	237	294	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g015240.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050889	0.0	AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBank	AY096674	0.0	AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499814.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010499823.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010499830.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010499839.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_019101525.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Swissprot	Q949U2	0.0	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	D7L0M9	0.0	D7L0M9_ARALL; Uncharacterized protein
STRING	XP_010499814.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]