PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g010090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 507aa    MW: 56182.5 Da    PI: 7.8631
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g010090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1680126148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av  + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   Csa01g010090.1  80 KGGWTPEEDETLRQAVGTFKGKSWKKIAEFFN-DRTEVQCLHRWQKVL 126
                      688*****************************.************986 PP
2Myb_DNA-binding58.21.8e-18132178148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde++v++v+++G+  W  Ia+ ++ gR +kqc++rw+++l
   Csa01g010090.1 132 KGPWTQEEDEKIVELVQRYGPAKWPVIAQSLP-GRIGKQCRERWHNHL 178
                      79******************************.*************97 PP
3Myb_DNA-binding54.62.5e-17184227146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+  l++a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   Csa01g010090.1 184 KDAWTSEEEVALINAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 227
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.48675126IPR017930Myb domain
SMARTSM007174.1E-1479128IPR001005SANT/Myb domain
PfamPF002494.6E-1580126IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-1581136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-1982135IPR009057Homeodomain-like
CDDcd001671.34E-1283126No hitNo description
PROSITE profilePS5129429.699127182IPR017930Myb domain
SuperFamilySSF466891.01E-31129225IPR009057Homeodomain-like
SMARTSM007172.3E-16131180IPR001005SANT/Myb domain
PfamPF002493.4E-17132178IPR001005SANT/Myb domain
CDDcd001679.54E-15134178No hitNo description
Gene3DG3DSA:1.10.10.609.6E-27136185IPR009057Homeodomain-like
SMARTSM007174.9E-17183231IPR001005SANT/Myb domain
PROSITE profilePS5129422.017183233IPR017930Myb domain
PfamPF002493.0E-15184227IPR001005SANT/Myb domain
CDDcd001672.90E-13186229No hitNo description
Gene3DG3DSA:1.10.10.607.3E-23186232IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MSCSLNPAAT CPDEMDLQEE TGEVKIEDKC VENKQSTPAS CSSVSEGSAG SSHKSPPTVA  60
SPATASPAHR RTSGPIRRAK GGWTPEEDET LRQAVGTFKG KSWKKIAEFF NDRTEVQCLH  120
RWQKVLNPDL VKGPWTQEED EKIVELVQRY GPAKWPVIAQ SLPGRIGKQC RERWHNHLNP  180
DINKDAWTSE EEVALINAHR IYGNKWAEIA KVLPGRTDNA IKNHWNSSLK KKSDFYLVTG  240
RLPPPPTPKN GAPDSVTKRS SSAQKRCSDS VTQIPSRTTD VKNPDEGGNG QLKSSVPLEE  300
IGAASRMNGV NEYACSPQFL NPEPLPENGG VAKNGYRLYY KPQTEYYVAS EVDTQRMYGH  360
DCGCSPIASP VSFFTPPPCR NKYSNGSTPR SPESFLREAA RTYPNTPSIF RKRRPRVVVP  420
DDNTAAKTDE AKEVDQKVNN GKDSSESPDS EEIQNNGSNA YNLSPPYRIR SKRTAVFKSR  480
QLEFISAEEE KGDVETKSAE QDMLID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-68792325158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-68792325158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g010090.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1426490.0AY142649.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBankAY5196510.0AY519651.1 Arabidopsis thaliana MYB transcription factor (At3g09370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472076.10.0PREDICTED: myb protein-like isoform X2
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLR0HXM60.0R0HXM6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010472002.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.20.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]