PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g007430.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 407aa MW: 42512.4 Da PI: 7.982

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g007430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.3	5.2e-13	57	82	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ Csa01g007430.1 57 DEPDCIYYMRTGVCGYGSRCRFNHPR 82 6899********************96 PP
2	zf-CCCH	37.3	4.4e-12	105	129	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++Ck++H++ Csa01g007430.1 105 HPVCQHFMRTGTCKFGASCKYHHPR 129 789********************96 PP
3	zf-CCCH	40.2	5.5e-13	252	276	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f+rtG Ck+G++C+++H+ Csa01g007430.1 252 DQPECQYFMRTGDCKFGSSCRYHHP 276 689*********************9 PP
4	zf-CCCH	29.7	1.1e-09	298	323	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +f + G+Ck+G+ CkF H++ Csa01g007430.1 298 GVAQCTHFTQHGICKFGPACKFDHSM 323 6788********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.8E-5	55	82	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.108	55	83	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-10	57	82	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	59	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	61	82	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.619	102	130	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-6	102	129	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	103	129	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.7E-10	104	129	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-5	107	129	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.5E-6	250	277	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.854	250	278	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-10	252	276	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-6	253	279	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	256	276	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.554	296	324	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-4	296	323	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-7	298	322	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.1E-5	299	324	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.5E-4	302	323	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MERYGRPGEQ GSRSDPSLQW TSHGGDTGLE ASMWRLGLSG GGGGGGGGGE PYPERPDEPD 60 CIYYMRTGVC GYGSRCRFNH PRDRGAVIGG GVRGEAGALP ERMGHPVCQH FMRTGTCKFG 120 ASCKYHHPRQ GGSGSVAPVS LSYLGFPLRQ GEKECSYYMR TVLTRPSLLP APYLQSPYGP 180 PMVLPPGMVP YPGWHPYQAS ISAMPSPGTQ PSIGSSSVYG IAPLSPSATV YTGPYQSGPS 240 SNTSKEFPQR PDQPECQYFM RTGDCKFGSS CRYHHPVDAV PPKSGLVLSS IGLPLRPGVA 300 QCTHFTQHGI CKFGPACKFD HSMSSSLSYS PSASSLTDMP VAPYPIGSSS LSGSSAPASS 360 SNEPTTEAAT AAVSSSIVSS LSRPEPAETS GDSASVSGST EAKTSS*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MERYGRPGEQ GSRSDPSLQW TSHGGDTGLE ASMWRLGLSG GGGGGGGGGE PYPERPDEPD  60
CIYYMRTGVC GYGSRCRFNH PRDRGAVIGG GVRGEAGALP ERMGHPVCQH FMRTGTCKFG  120
ASCKYHHPRQ GGSGSVAPVS LSYLGFPLRQ GEKECSYYMR TVLTRPSLLP APYLQSPYGP  180
PMVLPPGMVP YPGWHPYQAS ISAMPSPGTQ PSIGSSSVYG IAPLSPSATV YTGPYQSGPS  240
SNTSKEFPQR PDQPECQYFM RTGDCKFGSS CRYHHPVDAV PPKSGLVLSS IGLPLRPGVA  300
QCTHFTQHGI CKFGPACKFD HSMSSSLSYS PSASSLTDMP VAPYPIGSSS LSGSSAPASS  360
SNEPTTEAAT AAVSSSIVSS LSRPEPAETS GDSASVSGST EAKTSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g007430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK230438	0.0	AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006297647.1	0.0	zinc finger CCCH domain-containing protein 34
Swissprot	Q9SQU4	0.0	C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBL	R0HYC6	0.0	R0HYC6_9BRAS; Uncharacterized protein
STRING	Cagra.0922s0006.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1779	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-161	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]