PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g003150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRAS | ||||||||
Protein Properties | Length: 728aa MW: 80254.3 Da PI: 4.6822 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 281.2 | 3e-86 | 182 | 418 | 1 | 251 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cAea+++++l+la+al++r+ +la++++ +m ++a+yf++ALa+r++r +++ +++s e + f+e +P+lkf+h Csa01g003150.1 182 LVHALVACAEAIQQDNLTLADALVKRVGTLAASQAGAMGKVATYFAQALARRIYR---------GYTAD--TDVSFEEVLQMHFYESCPYLKFAH 265 689****************************************************.........22223..235666556667************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taNqaIleav++++rvH+iD++++qG+QWpaL+qaLa Rp+gpp +R+Tgvg+p+++++++l+++g+rLa+fA++lgv+fef+ l+a++l+dle Csa01g003150.1 266 FTANQAILEAVATSRRVHVIDLGLNQGMQWPALMQALALRPGGPPLFRLTGVGPPQKENSDSLQQLGWRLAQFAQNLGVEFEFKGLAAESLSDLE 360 *********************************************************************************************** PP GRAS 191 leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 +e+++++p E+l+Vn+v++lhrll++s+s+e+ +L +vk ++P +v+vveqea+hn Csa01g003150.1 361 PEMFETRPeSETLVVNSVFELHRLLARSGSIEK----LLGTVKAVKPSIVTVVEQEANHNXD 418 ********9************************....**********************975 PP | |||||||
2 | GRAS | 391.2 | 1.2e-119 | 426 | 718 | 79 | 374 |
GRAS 79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173 + f+e +P+lkf+h+taNqaIleav++++rvH+iD++++qG+QWpaL+qaLa Rp+gpp +R+Tgvg+p+++++++l+++g+rLa+fA++lg Csa01g003150.1 426 VLQMHFYESCPYLKFAHFTANQAILEAVATSRRVHVIDLGLNQGMQWPALMQALALRPGGPPLFRLTGVGPPQKENSDSLQQLGWRLAQFAQNLG 520 33445****************************************************************************************** PP GRAS 174 vpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 v+fef+ l+a++l+dle+e+++++p E+l+Vn+v++lhrll++s+s+e+ +L +vk ++P +v+vveqea+hn+ Fl+rf eal+yys+l Csa01g003150.1 521 VEFEFKGLAAESLSDLEPEMFETRPeSETLVVNSVFELHRLLARSGSIEK----LLGTVKAVKPSIVTVVEQEANHNGVVFLDRFNEALHYYSSL 611 *************************9************************....***************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361 fdsle +++ s++r+ +++++lg +i nvva+eg++r+erhetl +Wr+r+++ GF pv+l+++ kqa+ ll+ ++ +dgyrvee++g+l+lg Csa01g003150.1 612 FDSLEDSYSLPSQDRA-MSEVYLGGQILNVVAAEGTDRVERHETLPQWRNRMKTGGFDPVHLGSSGFKQASILLSVFAaGDGYRVEEKDGCLMLG 705 *******988887776.56677************************************************************************* PP GRAS 362 WkdrpLvsvSaWr 374 W++rpL+++SaW+ Csa01g003150.1 706 WQTRPLITTSAWK 718 ************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 5.7E-40 | 42 | 114 | No hit | No description |
Pfam | PF12041 | 4.1E-34 | 42 | 108 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 61.953 | 156 | 697 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-83 | 182 | 418 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-117 | 426 | 718 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MKRGHGETWD PPRPSRCSGE GPAMVDKKMA AADDNNNNNM DDELLAVLGY KVRSSEMAEV 60 AQKLEQLEMV LSNDDVGSST LLNDTVHYNP SDLSNWVESM LSELNNPASS DLDPTTGGCV 120 DRSEYDLRAI PGLSAFPKQE EEVFDEEEAS SKRIRLGSYC ESTGESTRPV VLVDSQETWV 180 RLVHALVACA EAIQQDNLTL ADALVKRVGT LAASQAGAMG KVATYFAQAL ARRIYRGYTA 240 DTDVSFEEVL QMHFYESCPY LKFAHFTANQ AILEAVATSR RVHVIDLGLN QGMQWPALMQ 300 ALALRPGGPP LFRLTGVGPP QKENSDSLQQ LGWRLAQFAQ NLGVEFEFKG LAAESLSDLE 360 PEMFETRPES ETLVVNSVFE LHRLLARSGS IEKLLGTVKA VKPSIVTVVE QEANHNXDTD 420 VSFEEVLQMH FYESCPYLKF AHFTANQAIL EAVATSRRVH VIDLGLNQGM QWPALMQALA 480 LRPGGPPLFR LTGVGPPQKE NSDSLQQLGW RLAQFAQNLG VEFEFKGLAA ESLSDLEPEM 540 FETRPESETL VVNSVFELHR LLARSGSIEK LLGTVKAVKP SIVTVVEQEA NHNGVVFLDR 600 FNEALHYYSS LFDSLEDSYS LPSQDRAMSE VYLGGQILNV VAAEGTDRVE RHETLPQWRN 660 RMKTGGFDPV HLGSSGFKQA SILLSVFAAG DGYRVEEKDG CLMLGWQTRP LITTSAWKLA 720 GAAESRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 7e-57 | 189 | 717 | 25 | 377 | Protein SCARECROW |
5b3h_D | 7e-57 | 189 | 717 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Acts as a major GA-response repressor of seed germination, including seed thermoinhibition. Promotes the biosynthesis of abscisic acid (ABA), especially in seed coats to maintain seed dormancy. Delays flowering and adult leaf production. Also regulates the floral development, petal, stamen and anther development, by repressing the continued growth of floral organs. Its activity is probably regulated by other phytohormones such as auxin and ethylene. Involved in the regulation of seed dormancy and germination, including glucose-induced delay of seed germination. Promotes salt tolerance. Acts as a repressor of positive regulators of trichome initiation. Required during the flagellin-derived peptide flg22-mediated growth inhibition. Contributes to the susceptibility to the biotrophic pathogen P.syringae pv. tomato and to the resistance to the necrotrophic pathogens B.cinerea A.brassicicola, probably by repressing the SA-defense pathway and preventing cell death. Prevents stress-induced reactive oxygen species (ROS) accumulation (e.g. salt stress) by acting on the ROS scavenging system, and delays ROS-induced cell death, thus promoting stress tolerance. {ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591, ECO:0000269|PubMed:16400150, ECO:0000269|PubMed:16916886, ECO:0000269|PubMed:17141619, ECO:0000269|PubMed:17384169, ECO:0000269|PubMed:17704233, ECO:0000269|PubMed:18162586, ECO:0000269|PubMed:18450450, ECO:0000269|PubMed:18450451, ECO:0000269|PubMed:18941053, ECO:0000269|PubMed:20093430, ECO:0000269|PubMed:20956298}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g003150.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated transiently following seed imbibition to decline rapidly as germination proceeds; this induction is delayed at supraoptimal temperature conditions (e.g. 34 degrees Celsius). Accumulates in seed coats of dormant seeds where germination does not occur after imbibition. Increased levels upon abscisic acid (ABA) treatment. Down-regulated by norflurazon (NF), an ABA biosynthesis inhibitor. Induced by stress such as glucose, salt or mannitol treatment. {ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:16916886, ECO:0000269|PubMed:17384169, ECO:0000269|PubMed:18162586, ECO:0000269|PubMed:18450450, ECO:0000269|PubMed:18941053, ECO:0000269|PubMed:20956298}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ177759 | 0.0 | GQ177759.1 Arabidopsis thaliana ecotype Cvi-0 RGL2 gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510882.1 | 0.0 | PREDICTED: DELLA protein RGL2 isoform X2 | ||||
Refseq | XP_019099599.1 | 0.0 | PREDICTED: DELLA protein RGL2 isoform X1 | ||||
Swissprot | Q8GXW1 | 0.0 | RGL2_ARATH; DELLA protein RGL2 | ||||
TrEMBL | D7L0H6 | 0.0 | D7L0H6_ARALL; Uncharacterized protein | ||||
STRING | XP_010510942.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM837 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 0.0 | RGA-like 2 |