PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g001660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 363aa MW: 40239.3 Da PI: 7.1575 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.1 | 1.2e-32 | 72 | 186 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak++i+el+ ++ s+++++ ++++s + ++ + Csa01g001660.1 72 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSlfNHHQSFLNLGQRPVHqdptql 166 689*************************************************************9999988876666666665544443555566 PP TCP 89 ...................k 89 + Csa01g001660.1 167 gfkingcveetttssrevnN 186 66666665433322222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.9E-29 | 74 | 175 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.314 | 74 | 132 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MNIVPWKDAN DEVSGGAATR REGDIEEDQE EDQARATSGK TVNKKPSTSI SSSSSSWMKS 60 KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI QLYDLQERLG VDQPSKAVDW 120 LLDAAKEEID ELPPLPISPE NFSLFNHHQS FLNLGQRPVH QDPTQLGFKI NGCVEETTTS 180 SREVNNKEKG DNDVVFTNNH HIGSYGTYHH NMEHHHHHHQ HQHLSFQGDY HQHQLHSLVP 240 FPSQILVCPM TTSTTTTTIQ SLFPSSSSAG SGTMESIDPR QMASHFQMPL MGNSSSSSSS 300 QNISTLYSLL HGSSSNNNGG RDINNRMPYV QFSRDNTTTA ASMSKLRGSE SSSTSRGSEH 360 HM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 79 | 133 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 79 | 133 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g001660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB014465 | 0.0 | AB014465.1 Arabidopsis thaliana mRNA for TFPD, complete cds. | |||
GenBank | ATAC009755 | 0.0 | AC009755.7 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence. | |||
GenBank | ATAC011664 | 0.0 | AC011664.10 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence. | |||
GenBank | BT001982 | 0.0 | BT001982.1 Arabidopsis thaliana expressed protein (At3g02150) mRNA, complete cds. | |||
GenBank | BT008839 | 0.0 | BT008839.1 Arabidopsis thaliana At3g02156 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010450307.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Swissprot | Q9S7W5 | 0.0 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | A0A178VKM0 | 0.0 | A0A178VKM0_ARATH; TFPD | ||||
STRING | XP_010450307.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 1e-161 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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