PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g001540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 334aa    MW: 38166.3 Da    PI: 9.8825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g001540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051289311123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+Fs+   L  H+  H
  Csa01g001540.1 289 HRCGLCDKVFSTYQALGGHQTFH 311
                     79*************99999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.637497IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9974102IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-77597No hitNo description
PROSITE patternPS0002807697IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-7284311No hitNo description
PROSITE profilePS501579.078289316IPR007087Zinc finger, C2H2
PfamPF139122.1E-7289312IPR007087Zinc finger, C2H2
SMARTSM003550.31289311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280291311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEDHHQEFEK PIFVFVPNKL RNSRVSRNRK MKNGFRESMS HYEELSCYYG LRKNPKKIQK  60
SLLVQPRRNK KSLIRCKECG KGFLYEKCLL NHRLVTHSEE SVVRTSLLCS FSVVQKRKRS  120
KRVSRYKKKS TRFSVSSSSS SFTMFPVSVD DDGELLEVAE SLILLSMSGG KFLNVLELFG  180
KALDSNQRES GYGFLRNEQK LVAEEDRVVS NEQKKLLGIS TESDGTWKEL SDFLADKKVR  240
EDDESGQQKQ VGGAGMLREA TEQKLVRQET TFEDSNSGNK SLQMNIDEHR CGLCDKVFST  300
YQALGGHQTF HRIRNKSKSQ TKSCRDESVE VGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114121QKRKRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g001540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436790.10.0PREDICTED: uncharacterized protein LOC104720349
TrEMBLQ9MAB71e-141Q9MAB7_ARATH; T4P13.29 protein
STRINGXP_010436790.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.17e-21C2H2 family protein