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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01575s020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 136aa MW: 14582.2 Da PI: 10.1652 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 70 | 92 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H Csa01575s020.1 70 VCPQCGAKFSSVTSLVEHVEKtH 92 6*****************99888 PP | |||||||
2 | zf-C2H2 | 21.4 | 6.6e-07 | 107 | 129 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ +L++Hi + H Csa01575s020.1 107 VCPKCSRGFRDPVDLVNHIERdH 129 7******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.01 | 69 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.45 | 69 | 97 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.92E-5 | 70 | 125 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 71 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 73 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 7.9 | 106 | 129 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.954 | 106 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MGFLSSSSSR KEAKTTRPNK ASASTSSSSS TSRWSNLLSS AEAGISRLGN DISQKLQFSS 60 SSSNDGIIEV CPQCGAKFSS VTSLVEHVEK THERNKKQIH GKVTVDVCPK CSRGFRDPVD 120 LVNHIERDHR GTSKA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01575s020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002339 | 1e-128 | AC002339.3 Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete sequence. | |||
GenBank | AY065272 | 1e-128 | AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds. | |||
GenBank | AY096620 | 1e-128 | AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds. | |||
GenBank | CP002685 | 1e-128 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010497091.1 | 4e-94 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like | ||||
Swissprot | Q8VZ42 | 4e-70 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A178VRV3 | 1e-67 | A0A178VRV3_ARATH; Uncharacterized protein | ||||
STRING | XP_010497091.1 | 1e-93 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 8e-67 | C2H2 family protein |