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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa00780s040.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
LBD |
| Protein Properties |
Length: 188aa MW: 19807.6 Da PI: 6.5035 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa00780s040.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 84.3 | 1.8e-26 | 3 | 75 | 28 | 100 |
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
++fa+vhk+FGasnv+kll ++pe++r+da+ s+++eA+ar+rdP+yG+v++i +lqqq+ +l++el++l+++
Csa00780s040.1 3 AHFAAVHKVFGASNVSKLLLHIPEHKRPDAVVSICFEAQARLRDPIYGCVAHIVSLQQQVVSLQTELSYLQAH 75
79******************************************************************99986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 188 aa
Download sequence Send
to blast |
GAAHFAAVHK VFGASNVSKL LLHIPEHKRP DAVVSICFEA QARLRDPIYG CVAHIVSLQQ 60
QVVSLQTELS YLQAHLATLE LPQPQPPMAP VSSSGSLQAL SITDLPTISP SLYDLSSFFE 120
PVMSSTWAMQ QQTRPSDHVF GVPSSSSIIG GGGEIQALAP EFIHGGQMPA QPSLGTSGSA 180
STVIKRE*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB473852 | 0.0 | AB473852.1 Arabidopsis thaliana ASL19 mRNA for ASYMMETRIC LEAVES2-like 19 protein, complete cds. |
| GenBank | AF432232 | 0.0 | AF432232.1 Arabidopsis thaliana LOB DOMAIN 30 (LBD30) mRNA, complete cds. |
| GenBank | BT026407 | 0.0 | BT026407.1 Arabidopsis thaliana At4g00220 mRNA, complete cds. |
| GenBank | DQ446787 | 0.0 | DQ446787.1 Arabidopsis thaliana clone pENTR221-At4g00220 LOB domain protein 30/lateral organ boundaries domain protein 30 (At4g00220) mRNA, complete cds. |
