PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 204aa MW: 23180.9 Da PI: 4.9677

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa00532s330.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4e-19	5	51	10	56
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 q++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k Csa00532s330.1 5 FQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 51 5999******************************************9 PP
2	HD-ZIP_I/II	123.4	1.1e-39	6	89	10	93
HD-ZIP_I/II 10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 qv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ k++++Lr+e+++ Csa00532s330.1 6 QVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVKDNDKLRSEVTS 89 9******************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.39	1	53	IPR001356	Homeobox domain
SMART	SM00389	1.6E-12	1	57	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-18	5	63	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-21	5	60	IPR009057	Homeodomain-like
Pfam	PF00046	3.9E-16	6	51	IPR001356	Homeobox domain
CDD	cd00086	1.61E-16	6	54	No hit	No description
PRINTS	PR00031	2.5E-6	24	33	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	28	51	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.5E-6	33	49	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.6E-17	53	94	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MMHVFQVHLL EKSFETENKL EPERKTQLAK KLGLQPRQVA VWFQNRRARW KTKQLERDYD 60 LLKSTYDQLL SNYDSIVKDN DKLRSEVTSL TEKLLGKDEE ANELPPGRQV PEPNQLDPVY 120 LNPAAIKTED RLSSGSVGSA VLDEDAPQLL DSCDSYFPSL VPIHSQQDNI ACDNDRACFS 180 DVFVPTTSPS HHHSESLGFW GWP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	53	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa00532s330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058188	1e-176	AY058188.1 Arabidopsis thaliana AT3g01470/F4P13_2 mRNA, complete cds.
GenBank	AY098972	1e-176	AY098972.1 Arabidopsis thaliana AT3g01470/F4P13_2 mRNA, complete cds.
GenBank	X58821	1e-176	X58821.1 A.thaliana homeobox gene Athb-1 mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010496310.1	1e-145	PREDICTED: homeobox-leucine zipper protein HAT5-like
Swissprot	Q02283	1e-122	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	R0HRX8	1e-122	R0HRX8_9BRAS; Uncharacterized protein
STRING	XP_010496310.1	1e-145	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8884	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-115	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]