PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00518s050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 787aa    MW: 87950.4 Da    PI: 6.2474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00518s050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-18111161255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  Csa00518s050.1 111 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 161
                     8********.**********44465..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-28110170IPR001471AP2/ERF domain
PROSITE profilePS5103222.721111170IPR001471AP2/ERF domain
SMARTSM003806.5E-35111176IPR001471AP2/ERF domain
PfamPF008471.8E-11111161IPR001471AP2/ERF domain
CDDcd000187.10E-27111170No hitNo description
SuperFamilySSF541715.75E-20111171IPR016177DNA-binding domain
PRINTSPR003673.7E-10112123IPR001471AP2/ERF domain
PRINTSPR003673.7E-10135151IPR001471AP2/ERF domain
Gene3DG3DSA:1.10.275.102.8E-45320437IPR024083Fumarase/histidase, N-terminal
SuperFamilySSF485575.03E-98321770IPR008948L-Aspartase-like
TIGRFAMsTIGR009288.1E-120330773IPR004769Adenylosuccinate lyase
PfamPF002065.6E-54333635IPR022761Fumarate lyase, N-terminal
CDDcd015980341769No hitNo description
PRINTSPR001492.3E-13435453IPR000362Fumarate lyase family
Gene3DG3DSA:1.20.200.102.6E-82438712No hitNo description
PRINTSPR001492.3E-13481499IPR000362Fumarate lyase family
PRINTSPR001492.3E-13569596IPR000362Fumarate lyase family
PRINTSPR001492.3E-13617633IPR000362Fumarate lyase family
PROSITE patternPS001630617626IPR020557Fumarate lyase, conserved site
PfamPF083285.5E-51654768IPR013539Adenylosuccinate lyase PurB, C-terminal
Gene3DG3DSA:1.10.40.302.7E-32713768No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006188Biological ProcessIMP biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004018Molecular FunctionN6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MVFGNIQEPD GEILKNVWAN YIRKSQQTDK ISSGHVPEVF TTWEALPTID NILEDSKEWF  60
PSLDMSMEAQ EWTEFLNAVT SFPNKTIHDP LTNPTIDSCS LSSRASCKTR KYRGVRRRPW  120
GKFAAEIRDS TRNGVRVWLG TFQTAEEAAM AYDKAAVRIR GTQKANTNFQ LETVIKAMEM  180
DCSPNYYPIH SSNTSQPLRS GHEIGWRTEK EATMAYDKVV DDGMVENHCT LGDPSTKEFT  240
ETCGLLGSGE TCSIFFPMAL TNTKIPCLGV TPTTRSLLNP SKSLCLAPRV SFSVSSTDSL  300
KLITSRKVVA MAGASSRDLE MSNLTALSPL DGRYWGKVNE LASSMSEFGL IYFRVLVEIK  360
WLLKLSNIPE VTEVPSFSKE AQEYLQGIID GFSVDDALEV KKIERVTNHD VKAVEYFLKQ  420
KCESHPEIAK VLEFFHFACT SEDINNLSHA LMLREALSSV ILPTMDELIK SISLMAKSFA  480
YVPMLSHTHG QAASPTTLGK EMAIFAVRLS EERRYLSETK IKGKFAGAVG NYNAHISAYS  540
NIDWPHVAEE FVTSLGLTFN PYVTQIEPHD YMARLFNTIS QFNNILIDFD RDIWSYISLG  600
YFKQATLMQI TKAGEIGSST MPHKVNPIDF ENSEGNLGIA NAQLAFLSMK LPISRMQRDL  660
TDSTVLRNMG VALGHSLLAY KSAIQGIGKL QVNEARLKEH LDHTWEVLAE PIQTVMRRYG  720
VPEPYEKLKE LTRGRAVDEE NIRKFIKGLD LPEEAKDQLL ELTPHKYVGA AAALALAVDE  780
AVHLGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2pts_A0.03197801454Adenylosuccinate lyase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00518s050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0808670.0AY080867.1 Arabidopsis thaliana At1g36280 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496224.10.0PREDICTED: uncharacterized protein LOC104773339
SwissprotP447970.0PUR8_HAEIN; Adenylosuccinate lyase
TrEMBLA0A3P6FPD50.0A0A3P6FPD5_BRAOL; Uncharacterized protein
STRINGBo1g019590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM511824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-121ERF family protein