PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre14.g620850.t1.2

Common Name

CHLREDRAFT_183777, NSG17

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

bHLH

Protein Properties

Length: 536aa MW: 53834.1 Da PI: 10.3413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre14.g620850.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	140	185	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++E+rRR riN+++e Lr+l+P+a ++ + a Le++++YI L Cre14.g620850.t1.2 140 RHQAAEQRRRTRINERLELLRKLVPHA-----ERANTACFLEEVIKYIEAL 185 599*********************9.....8*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.351	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-13	139	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-13	139	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-9	140	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-8	141	187	No hit	No description
SMART	SM00353	1.2E-4	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MQPTSLTGRQ QQQLGLLGLA GRTQPDMLEA ARVAALLNGQ GQFNLQTSGL GSGALSGQSL 60 NLSLGSLPTS SLQQTSQQAP MQQSSQLGLP DQLALLSGFP AALFPQQYGS GDRDLQLGGL 120 RNVGKTKSSD SRSSSAYASR HQAAEQRRRT RINERLELLR KLVPHAERAN TACFLEEVIK 180 YIEALKARTL DLESQVEALT GKPVPKSLAL PTGMPSVLAG GSTSADNTNA SPRMVGAATS 240 SQGGPAGSLP SGQPGAGGAG AGSLASPSTT PPPTMTAQQA SQQLSLMQSG GQAGGSQGLP 300 SQLTLPSGGA GAGLLSAAQQ SLLGFPQSGG LSLSGAGLSL GGSGLGHGTS GISLTQFAGN 360 LQAAAAAAAA ASHGAGSQSH SQSQSQHSGL SLGSHHVTAS QLNELQAMQM MQSLQQHHNQ 420 HAAAAAVVAA AGGGGGSRPG STFHPTNNKA FLHFNEDAYA FSGKPELSLP ARSLLGAAAA 480 SAATPSTSLQ LTTVQLPADS NTLLQVEMAR KAASGSPVSS EESGVPLKKR KVLVL*

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MQPTSLTGRQ QQQLGLLGLA GRTQPDMLEA ARVAALLNGQ GQFNLQTSGL GSGALSGQSL  60
NLSLGSLPTS SLQQTSQQAP MQQSSQLGLP DQLALLSGFP AALFPQQYGS GDRDLQLGGL  120
RNVGKTKSSD SRSSSAYASR HQAAEQRRRT RINERLELLR KLVPHAERAN TACFLEEVIK  180
YIEALKARTL DLESQVEALT GKPVPKSLAL PTGMPSVLAG GSTSADNTNA SPRMVGAATS  240
SQGGPAGSLP SGQPGAGGAG AGSLASPSTT PPPTMTAQQA SQQLSLMQSG GQAGGSQGLP  300
SQLTLPSGGA GAGLLSAAQQ SLLGFPQSGG LSLSGAGLSL GGSGLGHGTS GISLTQFAGN  360
LQAAAAAAAA ASHGAGSQSH SQSQSQHSGL SLGSHHVTAS QLNELQAMQM MQSLQQHHNQ  420
HAAAAAVVAA AGGGGGSRPG STFHPTNNKA FLHFNEDAYA FSGKPELSLP ARSLLGAAAA  480
SAATPSTSLQ LTTVQLPADS NTLLQVEMAR KAASGSPVSS EESGVPLKKR KVLVL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Cre.13381	0.0	normal conditions\| nutrient deficiency

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre14.g620850.t1.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB167478	0.0	AB167478.1 Chlamydomonas reinhardtii NSG17 mRNA for NSG17 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001690311.1	0.0	predicted protein
TrEMBL	Q65Z16	0.0	Q65Z16_CHLRE; NSG17 protein
STRING	EDP10049	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5665	8	8
Representative plant	OGRP1360	17	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-10	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Cre14.g620850.t1.2
Entrez Gene	5715894

Publications ? help Back to Top
Abe J, et al. The transcriptional program of synchronous gametogenesis in Chlamydomonas reinhardtii. Curr. Genet., 2004. 46(5): p. 304-15 [PMID:15459796] Merchant SS, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 2007. 318(5848): p. 245-50 [PMID:17932292]