PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre13.g566200.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 733aa    MW: 69890.9 Da    PI: 5.1043
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre13.g566200.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-076788526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         C+ f+r+G C++Gd C+FaHg
  Cre13.g566200.t1.2 67 ACPEFRRNGCCRRGDACPFAHG 88
                        7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.9E-56090IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.01E-56192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8926290IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-66289IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-56788IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-595127IPR000571Zinc finger, CCCH-type
SMARTSM003561398121IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0061157Biological ProcessmRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MDALANKEVV FDLDAAAFSS DDFRIFQFKV KRCPRARPHD WTQCPFAHPG EKAKRRDPRK  60
YRYSGTACPE FRRNGCCRRG DACPFAHGVF ECWLHPSRYR TQMCTDGSNC KRRVCFFAHT  120
ESELRKPEED PLWLQQQLQA ELAAEQQVQQ QIQALKVFAN ILGPNTATLG GQQAAAAANG  180
QAGGGGGGNG MDMLKNLPAS TLTQLLGAVG GSGADTTSGP GGGSQSAAAA AASQAAASND  240
GLLQLLQMVE QQQAAAAAAS AAAAAPPPPP PLPPASSAPA NLASLLTAAV AGSGGAGGAG  300
GAAAGDLQLK LAAQLLQQAA AQPGGASAGG QQDLQTRLAA QLAGLGLGGG SAAAAPRAAD  360
AGGGDGKQGS QANLAMELLG LLAGQQQQQQ QQQQQQQQQQ QQQQQQQLAA AAAAALAAAA  420
QPQQQHAAQQ QAGSAGGGAG SAAALTAALA ALGLDASMLT GGAEPAAAAA PAPTAAQALP  480
ADAMAMLAAA LGGSHGATKE APAAAPAVAA APAPEAAAAA PSLDSLAALL AAAGGQGGAG  540
ALSPAMLSNL QSMLGGPAVT AATAPAAPPP PAPAPVSAAP ALPAAPAAAP AAAEVASSAA  600
SDGGASTASA APSTGGAAGA PEAPASPPAA AAAAPAPAPA PTAAAATAAT AAGDGAALAS  660
LLEAFYSKPE NLMTAQALLE RITAANGGAA AAAGLDPATM AALAGLAAGG SAAAAAGAAA  720
GAAPAAAPEG SQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre13.g566200.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CZA70.0A0A2K3CZA7_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-52C3H family protein