PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre12.g556400.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family NF-YC
Protein Properties Length: 297aa    MW: 30139.2 Da    PI: 5.2928
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre12.g556400.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC164.91.1e-51261322101
               NF-YC   2 lksfwekq.......iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                         lksfw++q         + t fknh+lPlarikki+k+dedv+misaeaPvl++kace+fileltlrsw+haeenkrrtl+++d+aaa+t+
  Cre12.g556400.t1.1  26 LKSFWQAQlvevsevPPDPTVFKNHQLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWMHAEENKRRTLQRNDVAAAITK 116
                         89******64432211234569********************************************************************* PP

               NF-YC  86 tdifdflvdivprdel 101
                         tdifdfl+divpr++ 
  Cre12.g556400.t1.1 117 TDIFDFLIDIVPREDG 132
                         *************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.88E-3116123IPR009072Histone-fold
PfamPF008083.3E-2151114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.6E-3852129IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGDQYNYYPG GYTGGIPPNH HQAEALKSFW QAQLVEVSEV PPDPTVFKNH QLPLARIKKI  60
MKSDEDVRMI SAEAPVLFAK ACEMFILELT LRSWMHAEEN KRRTLQRNDV AAAITKTDIF  120
DFLIDIVPRE DGKPEEGGAA APGGAAPATA PSPAGPGGSG NQQAASAAST AAPAAAAPRP  180
PAPPGMPTAP GMFFPPPFPM PPGALGDPSH AAAAAAAAAV MMRPPMGVDP NLVLQYQQQI  240
LAGQAPGWPH LPGLPPPPTS QPGAAAAAAA AAAAAAAAAA AGAAAAEGQA EAAKQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-50451291195NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101107RRTLQRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre12.g556400.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366598.14e-60nuclear transcription factor Y subunit C-3-like
TrEMBLA0A2K3D5T20.0A0A2K3D5T2_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP21951616
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.29e-55nuclear factor Y, subunit C4