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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre12.g550250.t1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | CPP | ||||||||
Protein Properties | Length: 1361aa MW: 132686 Da PI: 7.8898 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44.5 | 3.1e-14 | 31 | 67 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkk +Clk+YC Cfaag++Cs C C dC N Cre12.g550250.t1.2 31 TKRCNCKKARCLKLYCVCFAAGVFCSG-CACRDCLNAV 67 689************************.********86 PP | |||||||
2 | TCR | 45.6 | 1.4e-14 | 102 | 139 | 2 | 39 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +kkgC+C++s+C+kkYCeC+ a+++C+ +C+Ce+C+N Cre12.g550250.t1.2 102 HKKGCRCRRSRCVKKYCECYDAQVFCGGNCRCEQCQNM 139 89***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.7E-13 | 29 | 69 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 28.221 | 30 | 141 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.4E-11 | 32 | 66 | IPR005172 | CRC domain |
SMART | SM01114 | 5.4E-14 | 101 | 142 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.8E-11 | 103 | 139 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 1361 aa Download sequence Send to blast |
MSRPRRTKDE DYDMGYDQDQ DFGYASLAGG TKRCNCKKAR CLKLYCVCFA AGVFCSGCAC 60 RDCLNAVETA DLVHAERSKK LAASPGAFAP KVGAKGEGEL AHKKGCRCRR SRCVKKYCEC 120 YDAQVFCGGN CRCEQCQNMP RGGAPPPGLP PALLQHHPAM GAPLSLPLAG ALPSGLLPSQ 180 LLMRSGSGTA AAAAGPGGFN LAALAAAAGA GASSSGLANQ GGAAASAAGG ASAAGTAAAA 240 ALMLEKAFGG QAMVDPLADM EASGADDDPH ILPRDPLAAG RAGSSAGGGK AAGAGAAGGV 300 GGVAARDGVR AGLPERQGHA VGGPAGPAAV AAPRPGLAAS LAGLGINLDS PSLAGITAAA 360 AAGAPGAAAT TTAAPPAPAA TATDMAAAAA LAAGEAVSGL PARWSAPFLN SPDTATAAAA 420 AAMVAEEGSG GPASQDAHGA SRNPFSSAFM SRAAAEAAAV AAGGSSNLDG ARQRGSSGGS 480 GGRCSSDGAE GAAGPGQAAG CMGGSSRDAA RERVTRRSSS DPEDAGPGVG ARRERGGIDG 540 TGSALPLMPA PAGDPAAVAA ANAGIDLSVA PLTMPSALAL VPGGMMGGGG GAASADGVAA 600 LQGMASAAAL AAASAAAAVA QSVATAIEAR NASGGGAGSG AGNSAAAPPP GDVPGAAGAA 660 AGAAGEALTL EMVVAAPALL LEDPARAEEV AARVGLDATL QMAARKAAHI LKSLLHMAQR 720 ACPVDQMMMM GGTASAATAG TAAAAGAAFP GDDALQQQQH ASTGFPGFSA PVAPSASHLA 780 SAAGALPHDT QQHQLHLQQH QHQQNQLQAY GSGALSQPPS LQHLAIPPLH VPAPAPDNLS 840 HMPYSHMSYS HMQPHGQELH AQPSLHAPLP SLQPQPSGTA AAGSVGGGAP ATSLLPGSSQ 900 QLQTQPSGGG IRSLHRTGSG GGAMRLGSGS FRFGGAGGPT PAATRPEPSA ADQPSAAHHT 960 LRTSNHSTAL PGRRGSEMGQ PPLSASGAGA RSGAGFAPTS SAQRHHNHHH YTNHRRQSDA 1020 TNGGTDAGGG LRRGSRVKRP NSLLADMEMH HDLDPDFDPS AAGPDAAGAC RQHHHAHLPQ 1080 GPDRRLPHTS YVFGTAAHAL GRGRSSAEPP SPKRSRLHGD EGAGGSRRGA AARRRRRGGR 1140 GGGAGAGYDS GATSEEYDDL LAEVEEEEEL ELGEAEEVVW GQRQRPASMR GISQSPIMRR 1200 RSELSNGPLS SGGGGSALLP PSLLGTNGGP KPNSIISPFG PGASLGTHHT YGGATGSAFL 1260 SGGGGGGPRP TTSEARTGAG GRKRRLSSGT AARRTSVDGD YFAGGGVAAV AGGRGGGGGP 1320 QRSCGLAAAE AEGLGVGLGA DGDSSELEAM QALVGLATAH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-24 | 32 | 138 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 6e-24 | 32 | 138 | 12 | 120 | Protein lin-54 homolog |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1311 | 1318 | GGRGGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre12.g550250.t1.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3D681 | 0.0 | A0A2K3D681_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP323 | 15 | 30 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 4e-31 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Cre12.g550250.t1.2 |