PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre12.g523000.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 269aa    MW: 26092.8 Da    PI: 8.9663
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre12.g523000.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.6e-13931426
                        ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                         lC ff+rtGtC yGdrCkF+H+
  Cre12.g523000.t1.1  9 QLCTFFLRTGTCAYGDRCKFSHP 31
                        69********************9 PP
2zf-CCCH28.62.5e-095074327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        ++ C ++++ G+C +G++Ck++H++
  Cre12.g523000.t1.1 50 EPDCAHYLKKGWCAFGPTCKYNHPE 74
                        589********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.558533IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7632IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-8733IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-11931IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8933IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.614775IPR000571Zinc finger, CCCH-type
SMARTSM003560.0334874IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-54973IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-75074IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEPAPGQKQL CTFFLRTGTC AYGDRCKFSH PVDRPPPQLN SRGYPVRAEE PDCAHYLKKG  60
WCAFGPTCKY NHPEIVGGLS SYGLGQPPTA YVSLPTTTFP SAAVYSVPSA VPTLYYLPPG  120
MGPNQLAGST VSLLPSAVGA MAAAQPNQLA FTQQGALGGG TQATMYRQPA AASPYVGMGG  180
MGGGMGGGMG GGMGGGMGGG MGGGMGGGMG GGMGGGMGGG MGGGMGGMGG MGGMGGGGGM  240
GATSVSALHE AFQGLALGRS GGGLGGRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre12.g523000.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001697030.13e-89predicted protein
TrEMBLA0A2K3D4780.0A0A2K3D478_CHLRE; Uncharacterized protein
STRINGEDP007221e-88(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP623277
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.27e-18C3H family protein