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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre11.g476200.t1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | C3H | ||||||||
Protein Properties | Length: 832aa MW: 82258.8 Da PI: 5.9472 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.5e-10 | 306 | 330 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + G C++Gd+C++aHg Cre11.g476200.t1.2 306 WKTRICNKWKD-GNCPFGDTCRYAHG 330 8**********.*************9 PP | |||||||
2 | zf-CCCH | 37.3 | 4.7e-12 | 372 | 397 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ f+r tC+yGdrC+FaH++ Cre11.g476200.t1.2 372 KTRMCDEFMRAQTCRYGDRCSFAHSQ 397 89**********************97 PP | |||||||
3 | zf-CCCH | 38.7 | 1.7e-12 | 468 | 493 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC++++ t tC+yGd+C+FaHg+ Cre11.g476200.t1.2 468 KTRLCDRWMSTKTCQYGDKCTFAHGQ 493 8***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.44E-7 | 304 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-14 | 304 | 337 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.544 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-7 | 305 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-7 | 306 | 330 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-9 | 369 | 403 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.075 | 370 | 398 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 370 | 397 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-14 | 371 | 404 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 372 | 397 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.432 | 466 | 494 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-9 | 466 | 498 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-5 | 466 | 493 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-14 | 467 | 499 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 468 | 493 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 832 aa Download sequence Send to blast |
MFNNPYAMMG QMGQGQGQMG AGQQGQMNAQ QGQMGGQMGG QMGGQMGNQM QGMGQMGQQQ 60 QQPAGQQQGN AMAGMQGGMM QGMQGMGGMG MGAMQGMGGM GNNAMGGGMV AAGGNAAGQG 120 QAAGAATGAL PAAMQAMMGG QQGAGGAAGM QNMQQMMQQL QQQGMNPANM ANWQQAMASN 180 PQAMAAMQAY MQQYAMRMAA FQRMAAQAAT GGMAGPGGMA GPGVMGMPGA MGAPGMGGPM 240 GGPMGMGGPM GMGGMGMGGP PGAMGAMMAG GHGPGGMGGG PRPGMMGGHG HGPGGGGDGP 300 EGTRFWKTRI CNKWKDGNCP FGDTCRYAHG DADLRTPHMN GPGGPGGPRG GPVGPAGGGG 360 PLPPPKIGIM HKTRMCDEFM RAQTCRYGDR CSFAHSQAEL RPVPAGRYVP PGAQQAQGGA 420 AAAGGDKGAA PAAGTGAPPA AGGAAPAAGA APAAAGGAAA AGGDAMHKTR LCDRWMSTKT 480 CQYGDKCTFA HGQHELRQRP AGAFGRGTAQ RQAGGKPGAP GAPGAGDQQQ GGAPPAVGSK 540 REREGSAEPG SGGGDDADAD GAGANKRQHT TAGGSDGGED GAGGHAQAQE SEGAGGDGGD 600 WGDHGDDKAW GDGEGDGEAE AYNGGADGGE GDGEGHQGAA GGLDSYGSVG AEEAAAGAKV 660 KQEEAAGGAA AGAGGECELC AKLARAGRDK LLAALQAQGS PAVQKLGAMV LALSPRLDQL 720 WHKLSFGQLQ SMITKADLSV ADRVELLKSL CFHTHVSGEE RERLDSQKYV SQGLPAEVAD 780 FVAMVLADGK EGTAQMNEYF AALEVCKQLY GVNDEEYFNV SSTMANLFMN M* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Cre.8080 | 0.0 | normal conditions |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre11.g476200.t1.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3D8C6 | 0.0 | A0A2K3D8C6_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5512 | 7 | 7 |
Representative plant | OGRP2045 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cre11.g476200.t1.2 |