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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre10.g460400.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | C3H | ||||||||
Protein Properties | Length: 479aa MW: 49384.5 Da PI: 8.7989 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 222 | 245 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C++f G+C +Gd C+F+H+p Cre10.g460400.t1.1 222 PPCHHFVNAGFCDRGDGCPFNHPP 245 89********************97 PP | |||||||
2 | zf-CCCH | 24.2 | 5.9e-08 | 263 | 284 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C +f+rtG C++G rC+ +H Cre10.g460400.t1.1 263 PACEHFLRTGRCSFGVRCRLHH 284 68****************9777 PP | |||||||
3 | zf-CCCH | 22.7 | 1.7e-07 | 446 | 467 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +ar+G+C+ G+rC ++H+ Cre10.g460400.t1.1 446 ECLSYARSGWCSLGPRCLRHHP 467 799******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.14 | 218 | 246 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.028 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-5 | 222 | 245 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 222 | 245 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.685 | 259 | 287 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 259 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-5 | 263 | 284 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-5 | 399 | 427 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.765 | 399 | 427 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.19 | 399 | 426 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.812 | 441 | 469 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2 | 443 | 468 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-5 | 446 | 467 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MLLLFIEQHG VSPCTGQALR PNMLLPNTAL KNLIKAHVWD HMTSSPVPSK RPRLGAPAAP 60 AAAATAAVIT TATAAASLPT TPAAMASPQA PAPAAAPAPA PAHQPSSRWS DMGPPPVVAA 120 TAATSPAAAA TGPTGKPPAP APPPAAAPSQ KWGPPPTSAP LPWALQPQPQ RQPQRQQNSA 180 VAGSPGGGAA TPASAGTAAA GGGGLYVPCL HTLPAPVRPY APPCHHFVNA GFCDRGDGCP 240 FNHPPQAAVL LTEQGLPWRP NAPACEHFLR TGRCSFGVRC RLHHEPGAAG AVNGGGGNGG 300 GTPGAAAAGA LAGTPRQRWG DRSNGAAADT SPVIAGAQQQ QRQAPPSTQL PSTQAQAQAP 360 QPPSHQQPHP KPPGVGVTYT YDADAEEEGE LHRYRFPQRL DANPCRQYCN TGFCREGADC 420 RYDHPEELGV WLNEDGYPHR PLAQQECLSY ARSGWCSLGP RCLRHHPLRP RPAARERG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre10.g460400.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DBU8 | 0.0 | A0A2K3DBU8_CHLRE; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 5e-13 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Cre10.g460400.t1.1 |