PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre09.g397475.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 1134aa MW: 112897 Da PI: 7.9178

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre09.g397475.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3e-09	52	91	1	42
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 r W++ E + lv a++ G++ W++Ia+++ +R++ ++k+ Cre09.g397475.t1.1 52 RRQWSASECQTLVFAHAHTGNR-WSLIAKHFR-TRSDADVKN 91 678*****************.*****.*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.95E-10	37	99	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.493	47	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-10	49	98	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-5	51	99	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-7	52	91	IPR001005	SANT/Myb domain
CDD	cd00167	1.26E-5	55	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1134 aa Download sequence Send to blast
MNRPDTACCE GPPGRNASLS ASVVDTEGLD NTKVSSGCLD TPRRGPRTGK QRRQWSASEC 60 QTLVFAHAHT GNRWSLIAKH FRTRSDADVK NIFFSAMRSV RATPANLALR VYSRLVGPNC 120 EDPLLRRRAY EAARRAVLTG VEPDDQAAVA VAAAATATGG ARATAAGGTT GAAGDAAGDG 180 GCGGDDGGGG SDDGECAAAR PREAAPSGGG GGAKRRFQGG TWHILRSVGR VKQGRDALQS 240 DAAAAAPIVP QAAAAAAAAG AAAGAEGEEG AEGPAQQGGQ WPRRPQEVEW EEQWQQWQQR 300 QRKAELGVRQ QQLQVKQEEG DGKECGGEQP HQPRHEQIKM EPWDEEDVAV AAVVGRPLLL 360 GHRKRAGAVA SGSSGSAEWQ QPLQHQQQMM KCSAGLHGSR GAAAAATAAA TTVAAAGLGQ 420 QGGPAAGLHT AGGGGRRLRL LPGQQQQQQG HPAPPPPAAD RGPAGVFAAR SAAPVGDTGM 480 AATPDYYCAQ REGFAFTGGG SDGLAGSGRN QEQHQHQHPH PHQQGECIAA ANAAAFGSNR 540 RPEGFYGSNN NNNISGDALN GAGGAKSGGG TWPLLQAPPP YPSVLQLQQL QHQQLQAQHQ 600 HHQHQHQHQH QQRAASFGAT IGNGGFGYSI SAGAVAAGGS DTSGGGGYGR FSVPAGGSQQ 660 PALPHSQLLV AATAAALPFG GGGGGNGTEP GGYHNSFAVH NGGTSWAGGG SYRQQQQCQV 720 SQQSSPLLAP HNPTWASISI VAAAAAAAAA TAPAAAAATA SGYISSNSSG HVLYSSCGHA 780 AAAGSNAGGS SSFGMATVSP AAAVATAAAG GSSLVQLLAA AGAAAAAAGG SSSQVIITYL 840 QEPAAGGSSM HASATRVDAG VVDEMKHLLA STGSLDDLMD ELGISSGCSS STATTAAATA 900 AAAAATTAAT IRAASSNGNT GGSRPACADL LSAGRRQLLS PWRHMWAAGG RDGSAAAAAP 960 QPPQQQPQPS FATAAAFRSV AVSAAAAAAA AAPDSSNSSG QFGYRGGGGG SSSFSSSQQI 1020 PGGVPGGIPG GVPGGVVAAA ALPAAHGSYS HSLPASAPAA AAGINGLWAT QAMGWHHLQQ 1080 PQHPQEPLEP QQRQQWPQAG AQTYSSLSNA AATAAAAAAA GSFGSTGPVF MLD*

Sequence ? help Back to Top

Protein Sequence Length: 1134 aa Download sequence Send to blast

MNRPDTACCE GPPGRNASLS ASVVDTEGLD NTKVSSGCLD TPRRGPRTGK QRRQWSASEC  60
QTLVFAHAHT GNRWSLIAKH FRTRSDADVK NIFFSAMRSV RATPANLALR VYSRLVGPNC  120
EDPLLRRRAY EAARRAVLTG VEPDDQAAVA VAAAATATGG ARATAAGGTT GAAGDAAGDG  180
GCGGDDGGGG SDDGECAAAR PREAAPSGGG GGAKRRFQGG TWHILRSVGR VKQGRDALQS  240
DAAAAAPIVP QAAAAAAAAG AAAGAEGEEG AEGPAQQGGQ WPRRPQEVEW EEQWQQWQQR  300
QRKAELGVRQ QQLQVKQEEG DGKECGGEQP HQPRHEQIKM EPWDEEDVAV AAVVGRPLLL  360
GHRKRAGAVA SGSSGSAEWQ QPLQHQQQMM KCSAGLHGSR GAAAAATAAA TTVAAAGLGQ  420
QGGPAAGLHT AGGGGRRLRL LPGQQQQQQG HPAPPPPAAD RGPAGVFAAR SAAPVGDTGM  480
AATPDYYCAQ REGFAFTGGG SDGLAGSGRN QEQHQHQHPH PHQQGECIAA ANAAAFGSNR  540
RPEGFYGSNN NNNISGDALN GAGGAKSGGG TWPLLQAPPP YPSVLQLQQL QHQQLQAQHQ  600
HHQHQHQHQH QQRAASFGAT IGNGGFGYSI SAGAVAAGGS DTSGGGGYGR FSVPAGGSQQ  660
PALPHSQLLV AATAAALPFG GGGGGNGTEP GGYHNSFAVH NGGTSWAGGG SYRQQQQCQV  720
SQQSSPLLAP HNPTWASISI VAAAAAAAAA TAPAAAAATA SGYISSNSSG HVLYSSCGHA  780
AAAGSNAGGS SSFGMATVSP AAAVATAAAG GSSLVQLLAA AGAAAAAAGG SSSQVIITYL  840
QEPAAGGSSM HASATRVDAG VVDEMKHLLA STGSLDDLMD ELGISSGCSS STATTAAATA  900
AAAAATTAAT IRAASSNGNT GGSRPACADL LSAGRRQLLS PWRHMWAAGG RDGSAAAAAP  960
QPPQQQPQPS FATAAAFRSV AVSAAAAAAA AAPDSSNSSG QFGYRGGGGG SSSFSSSQQI  1020
PGGVPGGIPG GVPGGVVAAA ALPAAHGSYS HSLPASAPAA AAGINGLWAT QAMGWHHLQQ  1080
PQHPQEPLEP QQRQQWPQAG AQTYSSLSNA AATAAAAAAA GSFGSTGPVF MLD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	46	PRRGPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre09.g397475.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DER0	0.0	A0A2K3DER0_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9987	2	2

Link Out ? help Back to Top
Phytozome	Cre09.g397475.t1.1