PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.9	2.4e-13	887	936	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV+ ++++gr++A+I++ ++ ++g++gt eAa a+++ ++l+g Cre08.g383000.t2.1 887 SRYKGVSLYRRTGRYEAHIWHE-----GRQLHIGTYGTDLEAALAYDRVSRYLRG 936 79*****************5.....4******99*******999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.9E-8	887	936	IPR001471	AP2/ERF domain
CDD	cd00018	2.23E-11	887	944	No hit	No description
SuperFamily	SSF54171	3.07E-12	887	945	IPR016177	DNA-binding domain
PROSITE profile	PS51032	14.302	888	944	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-13	888	950	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.6E-12	888	945	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2189 aa Download sequence Send to blast
MTTTPQQPQQ QPQQQQQQHR QRRHSAAAAE QPPTPPRATA ATSTCCPPPL AAEAPAPATA 60 VVAAASRAAA AAAAGATAAA ANAVAAATAS MAASAALERQ FKVAVPDGHG VAAPAAPAAP 120 QQPPTPAAAA NIAPSPRVVS SNAAKPAAAA PAAASAAGAS GGPAAAAPTA AAAAAAVAAA 180 AAAAAAAAVT AGSNGSSAPT AVASSPVPAA AAGGSSSSSR QQQPRQQRCE EPRRERPQAV 240 PPLARASAGG CAAAAAATTA AARSTPAVFT SPPAPLRLSP RGPPPPPPLP QLPLPSPPAQ 300 LPPMPSPTKP RQNGSTGSGS GSGGGRRRGG GSPAATAATT AAAAAAEAAA AALQVAATSP 360 AVRAAGVAHR RAQLLRTSCV IVGSGSSSGG GGGGGSQQQL LLLGRMSHSR ESSGGGAPPT 420 IAAATALPAA AAPAAAGATA AASSAVAHGG VVSSPGGGRE AAGLWDWAVA APSPQRQQQP 480 QPLPGPAAAA EVAVAGAGAG GRDSASVSTP STESDEGAAQ WRAGSGGGRG GSVGRRRPSE 540 QQRPSRDEQQ QQQQQQPPQQ QQQPRPEPEE EEKAAAVRPP QPAAAIPPTT SRREQQQQQQ 600 QQQQQQQPST PLPALPQQPQ LPWSAALPPH PCWMPSAAAA AAVPAGGSDG ECGGASGGSD 660 GAVAELLAGW HLEEATSTPS RPPRPLLTVL LPSSCGSPGD AAAAAAAAVA AASAGAADTK 720 ATKAATASAT APAAPAPPQP LPLPPSPPQL TPVRRRWSAP GGEQEGEAQP QPQRKAAGCA 780 GAGGGDGASA TASAATAPAA ASAVAPAVAP ATAAAGAPRR QLLQQCPARP AAAGPCPAAP 840 AAPRSDAAAA TAAATAAAAA TALPAATAAA AAATAGSLAR GPRNRSSRYK GVSLYRRTGR 900 YEAHIWHEGR QLHIGTYGTD LEAALAYDRV SRYLRGAAAV VNFPSEAAAA AAITAAAASE 960 SAAASRDTAA TAASPQAAVT VRRDSAAAHP PSPSPGHTAE GPAAADEAGG GGGSGGASAG 1020 GGGGRGAGGG KPWPATLLDS IPAVASSAAA AAAGGGMPAP AAAAAVDEDA LLAAPCGGGG 1080 GGGRCVRRRI SALEPRSTVS PGVLQPPPPP AVPAAAAAPV SRQHTAAAAT THMMQQQQTV 1140 AAAMVVAASA AAAAAVAGAA HQAAAAANGG AAAAAAARRR RDSGGGAADI VTDGAAATSS 1200 AHARAAAAAC GASAAARPGP QAVSGGGGDG DDGHNAAATA AAAATGQGVI SQVTGGSAPP 1260 LQPWRPAATE VLDCNGCDGG GGDGDVDSSS ARASCWVARG LPGIDVAWRH SASAGAGAGG 1320 DHDDCCAPTD AVMLPAAVSA APHAFLPSTP QQHPQHPQRP QHVAAAAAPL LPPLAAVAAA 1380 AAAPARSFLR HSCPPDHPAA AAAAAAPSHQ DIQQPHHHHH HQPLTRSGSP PPPDPSSGGN 1440 SRREVAAALA ALLAAGVPPD FLAQVISRRQ PQAAQHELQR AHTQQLAAVD CHHMHLLLQP 1500 CPSSSHPPPP PATAAAAATT TPSPTTTRPT AATGKDAAIA AILKSLMGPQ QRPTPPPPPP 1560 PPPPPHAMPY PPAPAVKGPP PPGPPPPSPA LPPLQSNSGW CPSSRNSSSH PAATATAMAS 1620 ATATAIATGA GSGSADGASL DRSAVSSAAA AAAAATATGG SVGTCGAGGG GRGGGEEEEG 1680 SGLRRHVMTW VGGQLPGLRG GLLGGALLAA AAPPPPPTPA VAAAPATAMA EEPAVASGVS 1740 PDSIRSLLLL QRRLQQQQQQ VAAPPAEQQQ AGRPPCAPAA AAAAAAAADA DADMVDAVSS 1800 PRVAEAAEAQ PAVAAAVVCR RRHTTTELSY TPAGGFAAGA AAAASGSSYA REPPRQRPRL 1860 TSHYEEEQPQ QGQQRQQGQE QQQQPPLLPL LLLPTRRHTA PVWAHGGGGH ENGGRENAGG 1920 VSGGGGGGRE FGFCAVDEAD EELLCGGGGG GGGDGGSPLA LHWRQLQAMQ LQAQQAQQAQ 1980 QAQVSWSLGP QRVLELARGG GGGGGGGGGL LMPLSPSHQQ AQAQEQAQGW LLGQLLQQQG 2040 QQPQEGTPCS PTAVGGAAAA AAGGKRPRED ACYRSSADGV EALGLRLGLG GVGLGAGYAG 2100 AAASGMDGME SGGWEDAGQQ APLSDDVDAA SGEAAAPPAS AAPAAPEAPE AAAADWAPAP 2160 AARGHPDRKT RLLYGHQHHQ HHHLRPQL*

Sequence ? help Back to Top

Protein Sequence Length: 2189 aa Download sequence Send to blast

MTTTPQQPQQ QPQQQQQQHR QRRHSAAAAE QPPTPPRATA ATSTCCPPPL AAEAPAPATA  60
VVAAASRAAA AAAAGATAAA ANAVAAATAS MAASAALERQ FKVAVPDGHG VAAPAAPAAP  120
QQPPTPAAAA NIAPSPRVVS SNAAKPAAAA PAAASAAGAS GGPAAAAPTA AAAAAAVAAA  180
AAAAAAAAVT AGSNGSSAPT AVASSPVPAA AAGGSSSSSR QQQPRQQRCE EPRRERPQAV  240
PPLARASAGG CAAAAAATTA AARSTPAVFT SPPAPLRLSP RGPPPPPPLP QLPLPSPPAQ  300
LPPMPSPTKP RQNGSTGSGS GSGGGRRRGG GSPAATAATT AAAAAAEAAA AALQVAATSP  360
AVRAAGVAHR RAQLLRTSCV IVGSGSSSGG GGGGGSQQQL LLLGRMSHSR ESSGGGAPPT  420
IAAATALPAA AAPAAAGATA AASSAVAHGG VVSSPGGGRE AAGLWDWAVA APSPQRQQQP  480
QPLPGPAAAA EVAVAGAGAG GRDSASVSTP STESDEGAAQ WRAGSGGGRG GSVGRRRPSE  540
QQRPSRDEQQ QQQQQQPPQQ QQQPRPEPEE EEKAAAVRPP QPAAAIPPTT SRREQQQQQQ  600
QQQQQQQPST PLPALPQQPQ LPWSAALPPH PCWMPSAAAA AAVPAGGSDG ECGGASGGSD  660
GAVAELLAGW HLEEATSTPS RPPRPLLTVL LPSSCGSPGD AAAAAAAAVA AASAGAADTK  720
ATKAATASAT APAAPAPPQP LPLPPSPPQL TPVRRRWSAP GGEQEGEAQP QPQRKAAGCA  780
GAGGGDGASA TASAATAPAA ASAVAPAVAP ATAAAGAPRR QLLQQCPARP AAAGPCPAAP  840
AAPRSDAAAA TAAATAAAAA TALPAATAAA AAATAGSLAR GPRNRSSRYK GVSLYRRTGR  900
YEAHIWHEGR QLHIGTYGTD LEAALAYDRV SRYLRGAAAV VNFPSEAAAA AAITAAAASE  960
SAAASRDTAA TAASPQAAVT VRRDSAAAHP PSPSPGHTAE GPAAADEAGG GGGSGGASAG  1020
GGGGRGAGGG KPWPATLLDS IPAVASSAAA AAAGGGMPAP AAAAAVDEDA LLAAPCGGGG  1080
GGGRCVRRRI SALEPRSTVS PGVLQPPPPP AVPAAAAAPV SRQHTAAAAT THMMQQQQTV  1140
AAAMVVAASA AAAAAVAGAA HQAAAAANGG AAAAAAARRR RDSGGGAADI VTDGAAATSS  1200
AHARAAAAAC GASAAARPGP QAVSGGGGDG DDGHNAAATA AAAATGQGVI SQVTGGSAPP  1260
LQPWRPAATE VLDCNGCDGG GGDGDVDSSS ARASCWVARG LPGIDVAWRH SASAGAGAGG  1320
DHDDCCAPTD AVMLPAAVSA APHAFLPSTP QQHPQHPQRP QHVAAAAAPL LPPLAAVAAA  1380
AAAPARSFLR HSCPPDHPAA AAAAAAPSHQ DIQQPHHHHH HQPLTRSGSP PPPDPSSGGN  1440
SRREVAAALA ALLAAGVPPD FLAQVISRRQ PQAAQHELQR AHTQQLAAVD CHHMHLLLQP  1500
CPSSSHPPPP PATAAAAATT TPSPTTTRPT AATGKDAAIA AILKSLMGPQ QRPTPPPPPP  1560
PPPPPHAMPY PPAPAVKGPP PPGPPPPSPA LPPLQSNSGW CPSSRNSSSH PAATATAMAS  1620
ATATAIATGA GSGSADGASL DRSAVSSAAA AAAAATATGG SVGTCGAGGG GRGGGEEEEG  1680
SGLRRHVMTW VGGQLPGLRG GLLGGALLAA AAPPPPPTPA VAAAPATAMA EEPAVASGVS  1740
PDSIRSLLLL QRRLQQQQQQ VAAPPAEQQQ AGRPPCAPAA AAAAAAAADA DADMVDAVSS  1800
PRVAEAAEAQ PAVAAAVVCR RRHTTTELSY TPAGGFAAGA AAAASGSSYA REPPRQRPRL  1860
TSHYEEEQPQ QGQQRQQGQE QQQQPPLLPL LLLPTRRHTA PVWAHGGGGH ENGGRENAGG  1920
VSGGGGGGRE FGFCAVDEAD EELLCGGGGG GGGDGGSPLA LHWRQLQAMQ LQAQQAQQAQ  1980
QAQVSWSLGP QRVLELARGG GGGGGGGGGL LMPLSPSHQQ AQAQEQAQGW LLGQLLQQQG  2040
QQPQEGTPCS PTAVGGAAAA AAGGKRPRED ACYRSSADGV EALGLRLGLG GVGLGAGYAG  2100
AAASGMDGME SGGWEDAGQQ APLSDDVDAA SGEAAAPPAS AAPAAPEAPE AAAADWAPAP  2160
AARGHPDRKT RLLYGHQHHQ HHHLRPQL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	383	395	SGSSSGGGGGGGS
2	1022	1029	GGRGAGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre08.g383000.t2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DI67	0.0	A0A2K3DI67_CHLRE; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G39250.1	1e-10	AP2 family protein

Link Out ? help Back to Top
Phytozome	Cre08.g383000.t2.1