PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre08.g375400.t1.1
Common NameGSM1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family HB-other
Protein Properties Length: 935aa    MW: 92832.2 Da    PI: 6.5355
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre08.g375400.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.7E-6849914IPR001356Homeobox domain
SuperFamilySSF466891.37E-13850915IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-22854911IPR009057Homeodomain-like
CDDcd000861.07E-8855911No hitNo description
PfamPF059206.4E-14867906IPR008422Homeobox KN domain
PROSITE profilePS5007110.56875910IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MASMAAELRP SDGGSSLHML DSLLMMGLSS GGGVGGGGSS QSQILDSAGA AELAALLLPQ  60
HSNDPLHLMS TGDAALGLAG PMAAAEHHQH HPHHQHHSVP ATAGFPSQTP PPPLFSNATA  120
GAAPATRVRA AGSCGSGGVA GGTTSHSSED GVFHSADPHH HHQQHLQQPQ PQQQQQQQQQ  180
PQHQQQQQQQ QQQQPQQPQF HHHQPQQHQA QQAVAATAPA AAADHLFLPP AAAGAAGQQQ  240
AGWGAATGAH LFHSDAPNRP NGPKTPTNRN GYAMKPPPPA AAAAVMSGHA MAASGVVAGR  300
GGGGGGCDAE EDELTFAAAA AAEVSSDDEV MGGRGGAVMG RAAVGGFRTP APAPASAGAA  360
VNVAAAAPAA PAGTWVPKGK PAVEVSAWAP APAAPVAAAA AAAVAVSPTV AAFAAAPVVE  420
AVALVRSQQR QEQEHQLVQV AAAEQQDQQQ AKRPVRSSRR RAQESQQAAA EAQQAAQQAA  480
AAQQQQQHTG SGNIVGDKQG KPQGGLQQGR PVATQPSPPP PAVATAAAAA AATAPVATAP  540
VATVATAATA DTMPQRLTAV QQHEAYPAVV RGTLDVRKAC LPRFPLVARE QAEAELQSVA  600
TAALQQAAAA PGASAAVTAA AAAAAAAATA AGEGKAGEGK AATARRGGRG AAEAEAAAAL  660
PAVGASGNPG LDEAMGAYVR VAALYGDEAA AAVAECESLM ADFDNKLQLG NLATTFAAAA  720
SPTAAASGRA RGGARSGGVG GGGTKRVASG ANASGANSSG MSGGGGGDSA GAEAAAGDEM  780
EWAPGATSVD TATGGADDED GEEEEGQQPG GAAAAAAVAA AGGEASQLAA SIAATYGSQL  840
VQVAASLAQR PKVGKLPPAA TQLLKGWWDD NFVWPYPSEE DKKQLGEAAA LNNTQINNWF  900
INQRKRHWHK HFPNRRPPST REEAERLLRA AGAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre08.g375400.t1.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9896300.0DQ989630.1 Chlamydomonas reinhardtii gamete-specific protein minus 1 (GSM1) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0980.0A0A098_CHLRE; Gamete-specific minus 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP545189
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.18e-19KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Lee JH,Lin H,Joo S,Goodenough U
    Early sexual origins of homeoprotein heterodimerization and evolution of the plant KNOX/BELL family.
    Cell, 2008. 133(5): p. 829-40
    [PMID:18510927]