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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre08.g364400.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | ERF | ||||||||
Protein Properties | Length: 1379aa MW: 133833 Da PI: 5.6674 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.7e-20 | 706 | 754 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp + +r +lg+f+taeeAa+a++aa+++++g Cre08.g364400.t1.1 706 YRGVRQRP-WGKWAAEIRDP-----TvgARRWLGTFDTAEEAARAYDAAARAIRG 754 9*******.**********9.....4459***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-22 | 705 | 764 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-31 | 705 | 763 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.538 | 705 | 762 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-38 | 705 | 768 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-12 | 706 | 754 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 706 | 717 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.32E-18 | 706 | 762 | No hit | No description |
PRINTS | PR00367 | 3.1E-10 | 728 | 744 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1379 aa Download sequence Send to blast |
MEPSPSEGPP PGPPPGMLGA TTPAAGQQAS AGGPLPGSTT MPGPGQPGQL GQPAAPGQQA 60 PPAFAVPGVP APGLVYGAPR PGMPAVQPNP LAANPAALQQ QTAAAAAIYS TLLRPPGTAG 120 TAPALTPAQL AQSLPPNVLA AMQGLQAAQA QLQATAQANA AAQAAHAQAQ AQLQAAEAAK 180 AAQQGASTNS RAASPEGNPN QPAAQAPPPG VVPGAMPALP RPPMPGAVPP APAPPSTVPP 240 SPAAAMQALV SAQAALQAAQ AQMAAAAAAA AAVTAAGQAQ AGAAAPGGVP PGQVPTPAQL 300 QAQAQANFQA QMAAAQQLRN AAAAAAARPP FPGAPMPGQP APGAPAAAPA PLGTPPSAPP 360 GSAPAAGLPQ PAGSLPPPGQ PGGIRPPAVS PAAASQAVAA AAAAAAAAAA AVAGVRPPAP 420 GGPLAPPPAP SPSPAPAPAQ APVPMQHHQQ HQQPGPGAVS QSPASPPAPA APTLPNPSTS 480 PPAPPAPSPP PPPAGLRPTE QSPPPGAIPP GGGLISSLPP PPLPPPGMAL PPGSDGAPPP 540 PDLSGMPPGL TLPLLGPDGQ PIDPDAPLTE QQQLQLSEAM QAQMEQQMQM MAAQQEMMAQ 600 AGMQFPPGMQ FPPFPPGMPF PPFPPGMQLP PGMQMGMPPL PMPPMQPPMQ MMQEEELEPE 660 SSDSDNDMTS PRKRREKKKA PRGGGGGGGG GGGGDDVVSK GKNKTYRGVR QRPWGKWAAE 720 IRDPTVGARR WLGTFDTAEE AARAYDAAAR AIRGPAARCN FPLSSSHDDH YHHHVQQQQQ 780 QQQQQQLEAQ AMAAAAGGHM GGPNGMGGPP MGLMHGGPMG SVPEDEPLPG GPGGMPPPMM 840 EQPKVKLPAA AGLKLRGLKQ KVGPKKGGMD EPLIQSSMPG GLGAADIHGA MSVSDAMAAA 900 AAAGGAAGGA MPGLNGSPGN PFQMRIKTGL TPNFSGWHGP LPPGVAGSLG GSAAMMATSL 960 GNSSGGLLAN FPPLPEWPPA GSMGSAASMM MLGMSPGAGM EAYGTSYGNQ YGKSVDMMDM 1020 CAQLLEAGGE VPPSLHDADG SDVAKAGGAG SAGARLHLHS MWREWQAGSL GSGANVVDPL 1080 ATLGSLRNEL VIPPDFKSEG PNAGAGDGDL DGVHEMDEMM ILGTTPDFGR PSNDFFKNLP 1140 NSFGTGASSI GKGAAAGKAV AAAAAAAAAA AGAGGAGGAG TGASSGTLTL APPGSVAAAA 1200 GAGAAPLPFG SRGNSPPSDV PDPGGAGGSP LTHMLLHGRH GLAADPALLG MGQLSSDGAA 1260 LGVGGNDEDD YLMGMSPDLP TGSGKGKQPP GIREPGFESF MKAHAAQAAA GAATPKGAVA 1320 AAAGGGGSSG APSLELPVAA AAGGSPNRDT AGTGDLLSPT ISFAAGVGGL DLPPPDQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 702 | 766 | 2 | 67 | ATERF1 |
3gcc_A | 2e-19 | 702 | 766 | 2 | 67 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 671 | 676 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre08.g364400.t1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DGR4 | 0.0 | A0A2K3DGR4_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP132 | 15 | 40 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 8e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cre08.g364400.t1.1 |