PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre07.g353555.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family bHLH
Protein Properties Length: 821aa    MW: 79822.5 Da    PI: 5.1958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre07.g353555.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.5e-10387468448
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C.......................................TTS-STCHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.as....................................kapskKlsKaeiLekAv 48 
                         ah+ +E++RRdriN+ +e+L el+P  ++                                    +++++K  K +iL  Av
  Cre07.g353555.t1.2 387 AHSTVEKQRRDRINNLIEQLGELVPVcDPrqrlaaaagatsatfeaaeaagaavaagggggggggGGGGGKRPKHAILADAV 468
                         8*************************66699999999999999999999999999999999999999999999999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-9381415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.769383474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7387468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-6387419No hitNo description
Gene3DG3DSA:4.10.280.102.3E-10387413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-7389480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-10454487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-9456485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.698739820IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MSFLDYDLGE LDLAALLQND MPLPEGDTRG GTEQGPIASS LKREPESPAE LWDGAMQPSL  60
RKSPSCAWAP NGANSESDGV GSYRRSDSQL SFGAAFGGAA AATAAGGTSL HHDLNHVQST  120
LLCVGGGVNL FEDSDSDGGG SGFYSELTLL PPPPAAPVPP PRARGDTRIQ QQQQQQPAAA  180
PNSSLPPQNA SLAVTSSTAA NGTADVLLPA GGGGTAWQPP AAAAAAATLE VQTNLPMATA  240
PLSAATGAAV AQQPESISPL MTAPQQVATL VQQPLIPPIP RAPALPADTA AAIAFDPAAM  300
LAFLLPAATA AANAAASLLP AAGDAGPMLL PPPHRDSSIS GGTTAGGDNS SSGNGSGSGG  360
GAAATDGRGG SPGPAGSPLQ KSGGSIAHST VEKQRRDRIN NLIEQLGELV PVCDPRQRLA  420
AAAGATSATF EAAEAAGAAV AAGGGGGGGG GGGGGGKRPK HAILADAVVR YQQMQRDNEQ  480
LRRQLAAAAV SLAAAARPAA AAMVAAAAAA AAAAAADKAP SAVGTSGTTG TAAAPVATFP  540
PIAPLAIPEA TAASSIQPYP LMAPPVAAAA AAAAATTAAE GAAAGLATRR AAASITDGSG  600
IIAPGALAPA TAAPSTPAAF VPNCYYWPPT MPSAATGAAA AEYPEGATPP PGGAQSTGAP  660
VSPAAGGGGP LHASAAGHNA AAAAFTTSTA LPQRTLARPA LPPMPCLPPA TAPAPVPAPA  720
PATAAPAPAP APATASSWLV RVACPQRPGL VRVATAALTR AGVRLRSVVV RPPAKPFQNT  780
TLELEVWCEE EVMPREQQVA HIQAALETAL QAVVGENPAK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre07.g353555.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001702042.10.0predicted protein
TrEMBLA0A2K3DLI90.0A0A2K3DLI9_CHLRE; Uncharacterized protein
STRINGEDO972350.0(Chlamydomonas reinhardtii)