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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre07.g353500.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | ERF | ||||||||
Protein Properties | Length: 1393aa MW: 138383 Da PI: 4.5833 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.6e-18 | 876 | 925 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp ++ r +lg+f++aeeAa+a+++a++ l+g Cre07.g353500.t1.1 876 HYRGVRQRP-WGKYAAEIRDPLKG---GRMWLGTFDSAEEAARAYDEAARMLRG 925 6********.**********8543...7**********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.08E-28 | 876 | 933 | No hit | No description |
SMART | SM00380 | 2.8E-36 | 876 | 939 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-11 | 876 | 925 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.669 | 876 | 933 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-20 | 876 | 934 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-30 | 876 | 933 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 877 | 888 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 899 | 915 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1393 aa Download sequence Send to blast |
MDFIESAYNA EQARRRALLQ QQQQQQQQQQ QQQRAAGYAG GNAAGGGQAE IAAAAYEAGQ 60 MAVAAAAARR MGVPEQIINA LNVKQQQLQQ QQLILQLQQQ HQQHQQHHHQ QRQQQQQQQQ 120 QQQLQLQQQL RANGFGGQDA SAVVREAEML LREHQHQQQQ QRQKQMQQHQ QQGRQQPAGA 180 AAQQQHQREQ QQQQQWEREQ QLLRALEGSL AAGRAGGNGG RHVGRGQDES EMAERRRLIG 240 HQLEQQQHQH HQQQQQQQQQ QQQQQQHHQQ QQQHRQLLAA ATAAVAAAER GHMQLGVRVK 300 QERTPPSPGP GPPAPPTRQP SHHQTPPVPQ HRPATPTSAT QAAEADLLRP AGGGGGGGGA 360 GTGRGGARLP GLPGLPIHMP LMPTPDHLAW RVTKDGMLQI QLPLDPLDWT TAAEEAPAPD 420 PGAASRTHPV IALALTPLCL SSGMPIGDSC LLPLAEVLGH IQQQLTQRAA GRRDTAELRS 480 PGWDMFHPPE AEAAAAAAAA VAAAAPPRSP TDSQDRGADG KPAGQQPQPY KLQLLRLQDG 540 ATLEAAAGAA GGGGGGAAPV PVAPALKLRP LDSKAATGPP RGGAAGGLGA GGLVDDADDD 600 SAFNHLYNQH YDAAAAAFPG GLSAPSPIAQ LGLALVANTA SRLGATINGR APPAAATATA 660 AALGGGGGTG GVLDLSGGTS GAGSAVDQVC ELLRARRGAA GAGGAAALQA QGQGQGQGRG 720 HRVVSPALAG LPHIVVPLGA RRQPPSPAPP TPPAAAAVAA AAAAEAALNG GLAALSPAHL 780 ELLRQVKDSM VAHQTQQVQQ PPPLAAAAGA AANARAAAAA AADDVSTDDE KPARGRGGKG 840 GGRAGGGGVL TVEGPQGQVL KLKPGAAAKR SRGAVHYRGV RQRPWGKYAA EIRDPLKGGR 900 MWLGTFDSAE EAARAYDEAA RMLRGSAALC NFPLPGERGY GGQAGGGGGG GNGAGGGGGD 960 SDEEGGAQDA YEEDDGAAAG EAWIGGGGGG AGGSGGGAGG SGGVGAFRPR GGLGGLSGLD 1020 AIAAAAEAAE AAEAAAEAEA AAALVAAGGL AGARGEQEAD DMAAEAAAAA LLGAVAAANG 1080 RPAKRSRVSP AHGAAGAVGA VGAAGAGAGL GADGAHEDDP LLGPPPGRVP PGAAGAATGF 1140 GLELAADADL TAAAAAAQDL DGDADAVAAA AAAAATAAAV EMEAQVAAAA AAMAAAPDVA 1200 IDLGGEPDVE LGGELEAVAV QGVFGAELLG AAGAEAEAEA DVDIPAADAD NGAAADVEPR 1260 SLADAADVDV AVEETAAAAT DEAVAVAGAA DDGAAADGSD GGGEPDDDGD ADSIGVDADE 1320 YEEQVDVEAE GEVEGGPVEE AHAVAGQHER GGEGCDHGGA DSDGAEAAAG GAADTDAADV 1380 EMGGEMEAGD DE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 876 | 934 | 5 | 64 | ATERF1 |
3gcc_A | 5e-23 | 876 | 934 | 5 | 64 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 840 | 847 | GGRAGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre07.g353500.t1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DLG6 | 0.0 | A0A2K3DLG6_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP132 | 15 | 40 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-17 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cre07.g353500.t1.1 |